Wall clock time and date at job start Mon Mar 30 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36943 * 120.00009 * 2 1 4 4 H 1.07995 * 120.00324 * 200.18342 * 3 2 1 5 5 C 1.38811 * 119.99824 * 20.17583 * 3 2 1 6 6 N 1.31622 * 120.00288 * 15.07694 * 5 3 2 7 7 Si 1.86802 * 120.00167 * 195.07769 * 5 3 2 8 8 H 1.48501 * 109.46971 * 84.99963 * 7 5 3 9 9 H 1.48495 * 109.47437 * 205.00180 * 7 5 3 10 10 H 1.48504 * 109.47023 * 325.00266 * 7 5 3 11 11 C 1.46493 * 120.00367 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47435 * 270.00194 * 11 2 1 13 13 C 1.52997 * 119.81050 * 109.76642 * 12 11 2 14 14 C 1.53000 * 60.57979 * 112.33978 * 13 12 11 15 15 H 1.08998 * 119.80527 * 247.66436 * 14 13 12 16 16 C 1.56519 * 116.81248 * 90.03968 * 14 13 12 17 17 O 1.44423 * 105.06179 * 320.93355 * 16 14 13 18 18 C 1.44420 * 105.27714 * 319.79694 * 17 16 14 19 19 H 1.09009 * 109.46768 * 275.10405 * 1 2 3 20 20 H 1.08998 * 109.47406 * 35.10308 * 1 2 3 21 21 H 1.08996 * 109.46714 * 155.10945 * 1 2 3 22 22 H 0.97000 * 120.00258 * 179.97438 * 6 5 3 23 23 H 1.08998 * 109.47154 * 149.99874 * 11 2 1 24 24 H 1.09004 * 109.47002 * 29.99880 * 11 2 1 25 25 H 1.09000 * 117.43924 * 219.99226 * 13 12 11 26 26 H 1.09002 * 117.43076 * 4.69161 * 13 12 11 27 27 H 1.08995 * 109.98579 * 202.15168 * 16 14 13 28 28 H 1.09000 * 110.60101 * 80.02740 * 16 14 13 29 29 H 1.08999 * 110.37415 * 281.68398 * 18 17 16 30 30 H 1.09003 * 110.46951 * 159.39082 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1799 1.2147 -0.3227 5 6 1.5195 2.3512 0.4146 6 7 0.3854 2.2853 1.0793 7 14 2.2810 4.0129 0.0293 8 1 1.8686 4.4428 -1.3310 9 1 1.8188 5.0122 1.0256 10 1 3.7609 3.9044 0.0867 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4432 13 6 1.7091 -2.9203 2.0112 14 6 3.2206 -3.0031 1.7885 15 1 3.6197 -3.6672 1.0219 16 6 4.1349 -2.5676 2.9819 17 8 3.4760 -1.4197 3.5600 18 6 2.9887 -0.6547 2.4362 19 1 -0.3633 0.0914 1.0237 20 1 -0.3634 0.8407 -0.5909 21 1 -0.3632 -0.9322 -0.4325 22 1 -0.0548 3.0996 1.3694 23 1 3.1499 -1.1385 -0.5133 24 1 1.6085 -2.0285 -0.5129 25 1 1.3558 -2.8554 3.0403 26 1 1.0697 -3.4818 1.3300 27 1 5.1228 -2.2921 2.6131 28 1 4.2146 -3.3690 3.7164 29 1 3.8009 -0.0859 1.9835 30 1 2.1867 0.0139 2.7492 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689327944.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:49 Heat of formation + Delta-G solvation = -4.761415 kcal Electronic energy + Delta-G solvation = -13081.902280 eV Core-core repulsion = 10878.513320 eV Total energy + Delta-G solvation = -2203.388961 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.16914 -37.41472 -35.43176 -33.03961 -29.71842 -27.97257 -27.46802 -26.44342 -23.30871 -21.52194 -20.17692 -18.70538 -17.32664 -16.73829 -16.55135 -16.01893 -15.45289 -15.10466 -14.63255 -14.04835 -13.81245 -13.37133 -13.05209 -12.83381 -12.68535 -12.45991 -12.25188 -12.07551 -11.91328 -11.84290 -10.95263 -10.87439 -10.57535 -10.21392 -8.78949 -7.79882 -5.24855 1.46752 1.47757 1.55309 2.50373 2.70623 3.05155 3.36119 3.60290 3.77549 4.01880 4.06071 4.10955 4.49679 4.58822 4.74434 4.81100 4.86306 4.90683 4.95583 5.08246 5.12343 5.19801 5.29744 5.36737 5.65028 5.75218 5.89605 6.34603 7.17901 7.90815 8.34020 9.23476 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044680 B = 0.011909 C = 0.010629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.525992 B = 2350.609848 C = 2633.671650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.612 5.612 3 C -0.251 4.251 4 H 0.070 0.930 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.959 3.041 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.194 3.806 12 C -0.193 4.193 13 C -0.136 4.136 14 C -0.181 4.181 15 H 0.150 0.850 16 C 0.065 3.935 17 O -0.406 6.406 18 C 0.109 3.891 19 H -0.001 1.001 20 H 0.016 0.984 21 H 0.030 0.970 22 H 0.246 0.754 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -10.369 -0.275 11.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.334 5.334 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.788 3.212 8 H -0.213 1.213 9 H -0.226 1.226 10 H -0.195 1.195 11 C 0.068 3.932 12 C -0.196 4.196 13 C -0.172 4.172 14 C -0.200 4.200 15 H 0.168 0.832 16 C -0.011 4.011 17 O -0.326 6.326 18 C 0.032 3.968 19 H 0.018 0.982 20 H 0.035 0.965 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.134 0.866 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.185 -10.170 -0.016 11.415 hybrid contribution 0.006 1.358 -0.081 1.361 sum 5.191 -8.811 -0.097 10.227 Atomic orbital electron populations 1.20505 0.82765 0.95822 0.97406 1.44164 1.02087 1.01552 1.85571 1.19431 0.96891 0.85900 1.35947 0.91175 1.25632 0.98577 1.01265 0.99160 1.70250 1.20131 1.26858 1.41077 0.85396 0.78363 0.80435 0.76981 1.21282 1.22588 1.19497 1.20316 0.95754 0.86979 0.90166 1.24020 1.06285 0.89457 0.99811 1.22896 0.93709 0.99056 1.01574 1.24604 0.92794 1.01011 1.01608 0.83201 1.23467 0.94855 0.87907 0.94887 1.89069 1.75319 1.37838 1.30349 1.22301 0.96583 0.92796 0.85108 0.98221 0.96530 0.95149 0.94511 0.92903 0.91656 0.90607 0.86648 0.90734 0.87118 0.92992 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.93 9.02 127.77 1.15 10.08 16 2 N -0.61 -30.09 2.73 -726.95 -1.99 -32.08 16 3 C -0.25 -13.53 8.74 84.03 0.73 -12.80 16 4 H 0.07 3.68 7.86 -2.91 -0.02 3.66 16 5 C -0.05 -2.87 5.06 84.86 0.43 -2.44 16 6 N -0.94 -55.65 10.66 21.65 0.23 -55.42 16 7 Si 0.96 45.36 29.58 68.60 2.03 47.39 16 8 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 9 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 C 0.19 7.58 6.10 86.38 0.53 8.11 16 12 C -0.19 -7.09 2.77 -51.22 -0.14 -7.23 16 13 C -0.14 -4.21 9.64 30.59 0.29 -3.92 16 14 C -0.18 -4.99 7.33 -9.11 -0.07 -5.06 16 15 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 16 C 0.06 1.83 7.58 73.21 0.55 2.38 16 17 O -0.41 -15.78 11.30 -148.98 -1.68 -17.46 16 18 C 0.11 4.67 6.13 72.49 0.44 5.11 16 19 H 0.00 -0.03 7.41 -2.38 -0.02 -0.05 16 20 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 21 H 0.03 1.26 7.83 -2.39 -0.02 1.25 16 22 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 23 H 0.05 2.00 8.03 -2.39 -0.02 1.98 16 24 H 0.07 2.24 7.77 -2.38 -0.02 2.22 16 25 H 0.08 2.54 8.04 -2.39 -0.02 2.52 16 26 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 28 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.05 2.31 8.10 -2.39 -0.02 2.29 16 30 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -62.90 249.22 3.62 -59.28 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.10 Total: 4.05 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.93 Total: -5.76 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -1.76 Total: -87.50 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.68 Total: -17.46 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -62.90 3.62 -59.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689327944.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.523 kcal (2) G-P(sol) polarization free energy of solvation -62.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds