Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21293 * 120.00006 * 119.99875 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47425 * 90.00231 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00087 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00093 * 11 9 7 15 15 C 1.52999 * 109.46768 * 240.00680 * 2 1 3 16 16 C 1.53778 * 113.61809 * 159.13704 * 15 2 1 17 17 C 1.53953 * 87.02462 * 220.04724 * 16 15 2 18 18 C 1.53778 * 113.61624 * 61.52601 * 15 2 1 19 19 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 20 20 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 22 22 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 23 23 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 24 24 H 1.09004 * 112.84874 * 290.33565 * 15 2 1 25 25 H 1.09001 * 113.60984 * 334.56585 * 16 15 2 26 26 H 1.08997 * 113.61467 * 105.46693 * 16 15 2 27 27 H 1.08996 * 113.53816 * 270.81141 * 17 16 15 28 28 H 1.08994 * 113.74493 * 139.93906 * 17 16 15 29 29 H 1.08998 * 113.61762 * 254.53058 * 18 15 2 30 30 H 1.09003 * 113.61506 * 25.43737 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7297 -1.6968 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 2.1592 -0.8999 3.5738 8 1 2.7801 -1.7781 3.4746 9 6 1.8189 -0.4286 4.8359 10 7 1.0630 0.6396 4.9566 11 14 2.4358 -1.3135 6.3609 12 1 3.7424 -0.7397 6.7716 13 1 1.4536 -1.1456 7.4620 14 1 2.6018 -2.7585 6.0617 15 6 2.0399 -0.7211 -1.2493 16 6 3.4866 -0.3576 -1.6232 17 6 3.0232 -0.3617 -3.0914 18 6 1.6119 -0.0507 -2.5654 19 1 -0.3634 0.5139 -0.8898 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.1490 0.5383 2.5436 23 1 0.8258 0.9688 5.8376 24 1 1.8519 -1.7945 -1.2249 25 1 3.7962 0.6246 -1.2659 26 1 4.2078 -1.1407 -1.3899 27 1 3.1053 -1.3370 -3.5710 28 1 3.4531 0.4417 -3.6895 29 1 0.8219 -0.5865 -3.0917 30 1 1.4081 1.0155 -2.4662 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692741936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -38.735007 kcal Electronic energy + Delta-G solvation = -12610.735190 eV Core-core repulsion = 10405.873024 eV Total energy + Delta-G solvation = -2204.862166 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26055 -37.35052 -33.85882 -32.35540 -30.85985 -25.77613 -25.10554 -24.79538 -22.15841 -19.20443 -18.70332 -17.82321 -15.91249 -15.05832 -14.69192 -14.43454 -13.92413 -13.51656 -12.77334 -12.36701 -12.15858 -12.06121 -11.55295 -11.54051 -11.15424 -11.05890 -10.68240 -10.36557 -10.23588 -10.09696 -9.88672 -9.69168 -9.45583 -8.21591 -7.91004 -6.37320 -3.77848 3.20277 3.28355 3.34507 3.99490 4.21041 4.82366 4.96082 5.02297 5.16848 5.27830 5.43692 5.63051 5.76806 5.91531 5.95651 6.01854 6.10000 6.10354 6.24467 6.39017 6.44958 6.46631 6.68285 6.74749 6.94532 7.59119 8.11660 8.67111 9.22789 9.61743 10.13597 10.80616 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069446 B = 0.008318 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.094894 B = 3365.373228 C = 3608.048458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.079 0.921 4 C 0.448 3.552 5 O -0.594 6.594 6 N -0.564 5.564 7 C -0.300 4.300 8 H 0.102 0.898 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C -0.079 4.079 16 C -0.130 4.130 17 C -0.144 4.144 18 C -0.138 4.138 19 H 0.055 0.945 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.392 0.608 23 H 0.271 0.729 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 1.605 -10.259 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.097 0.903 4 C 0.234 3.766 5 O -0.479 6.479 6 N -0.200 5.200 7 C -0.429 4.429 8 H 0.120 0.880 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.195 1.195 15 C -0.098 4.098 16 C -0.167 4.167 17 C -0.182 4.182 18 C -0.176 4.176 19 H 0.074 0.926 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.226 0.774 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.404 1.037 -10.141 10.201 hybrid contribution -0.075 0.152 0.979 0.994 sum -0.480 1.189 -9.162 9.251 Atomic orbital electron populations 1.21722 0.94242 1.02118 1.01587 1.21172 0.96430 0.99699 0.94329 0.90310 1.19926 0.85277 0.87100 0.84320 1.90491 1.42268 1.28588 1.86592 1.41921 1.46031 1.27632 1.04425 1.19727 1.29126 1.10744 0.83330 0.88029 1.25248 0.96970 0.96562 0.99212 1.69617 1.36844 1.23093 1.24909 0.85878 0.78274 0.79724 0.80532 1.20453 1.20946 1.19473 1.22221 0.95673 1.00107 0.91766 1.22875 0.97415 1.01656 0.94788 1.22847 0.97199 1.01166 0.96944 1.22979 0.96592 1.00684 0.97321 0.92642 0.92584 0.92201 0.77440 0.91943 0.88902 0.90706 0.91359 0.90650 0.92079 0.91980 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.91 37.16 0.33 -1.91 16 2 C -0.09 -1.74 2.45 -91.77 -0.23 -1.96 16 3 H 0.08 1.36 7.98 -51.93 -0.41 0.94 16 4 C 0.45 10.87 7.08 -10.99 -0.08 10.79 16 5 O -0.59 -16.43 15.40 5.55 0.09 -16.34 16 6 N -0.56 -14.72 5.18 -10.96 -0.06 -14.78 16 7 C -0.30 -8.56 9.68 -14.93 -0.14 -8.70 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 11 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C -0.08 -1.31 2.51 -89.81 -0.23 -1.54 16 16 C -0.13 -2.05 7.54 -25.83 -0.19 -2.24 16 17 C -0.14 -1.82 8.09 -25.82 -0.21 -2.03 16 18 C -0.14 -1.79 6.75 -25.92 -0.17 -1.96 16 19 H 0.05 0.73 7.50 -51.93 -0.39 0.34 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.06 0.99 7.56 -51.93 -0.39 0.60 16 22 H 0.39 9.83 7.32 -40.82 -0.30 9.53 16 23 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 24 H 0.09 1.70 7.91 -51.93 -0.41 1.29 16 25 H 0.07 1.16 7.99 -51.93 -0.41 0.74 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 253.53 15.07 3.82 3.82 Total: -1.00 -30.52 253.53 -5.83 -36.35 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.36 Total: 7.93 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -1.02 Total: -9.06 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.67 Total: -39.09 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.09 Total: -16.34 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.52 -5.83 -36.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692741936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.382 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds