Wall clock time and date at job start Mon Mar 30 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21293 * 120.00006 * 119.99875 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31414 * 119.99926 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99969 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47425 * 90.00231 * 11 9 7 13 13 H 1.48499 * 109.47218 * 210.00087 * 11 9 7 14 14 H 1.48505 * 109.47256 * 330.00093 * 11 9 7 15 15 C 1.52999 * 109.46768 * 240.00680 * 2 1 3 16 16 C 1.53778 * 113.61809 * 159.13704 * 15 2 1 17 17 C 1.53953 * 87.02462 * 220.04724 * 16 15 2 18 18 C 1.53778 * 113.61624 * 61.52601 * 15 2 1 19 19 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 20 20 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 22 22 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 23 23 H 0.96999 * 119.99863 * 180.02562 * 10 9 7 24 24 H 1.09004 * 112.84874 * 290.33565 * 15 2 1 25 25 H 1.09001 * 113.60984 * 334.56585 * 16 15 2 26 26 H 1.08997 * 113.61467 * 105.46693 * 16 15 2 27 27 H 1.08996 * 113.53816 * 270.81141 * 17 16 15 28 28 H 1.08994 * 113.74493 * 139.93906 * 17 16 15 29 29 H 1.08998 * 113.61762 * 254.53058 * 18 15 2 30 30 H 1.09003 * 113.61506 * 25.43737 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7297 -1.6968 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 2.1592 -0.8999 3.5738 8 1 2.7801 -1.7781 3.4746 9 6 1.8189 -0.4286 4.8359 10 7 1.0630 0.6396 4.9566 11 14 2.4358 -1.3135 6.3609 12 1 3.7424 -0.7397 6.7716 13 1 1.4536 -1.1456 7.4620 14 1 2.6018 -2.7585 6.0617 15 6 2.0399 -0.7211 -1.2493 16 6 3.4866 -0.3576 -1.6232 17 6 3.0232 -0.3617 -3.0914 18 6 1.6119 -0.0507 -2.5654 19 1 -0.3634 0.5139 -0.8898 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5137 0.8900 22 1 1.1490 0.5383 2.5436 23 1 0.8258 0.9688 5.8376 24 1 1.8519 -1.7945 -1.2249 25 1 3.7962 0.6246 -1.2659 26 1 4.2078 -1.1407 -1.3899 27 1 3.1053 -1.3370 -3.5710 28 1 3.4531 0.4417 -3.6895 29 1 0.8219 -0.5865 -3.0917 30 1 1.4081 1.0155 -2.4662 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692741936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:22 Heat of formation + Delta-G solvation = -58.402952 kcal Electronic energy + Delta-G solvation = -12611.588057 eV Core-core repulsion = 10405.873024 eV Total energy + Delta-G solvation = -2205.715032 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.82068 -38.97179 -35.95096 -33.97391 -32.80441 -27.27797 -26.80896 -26.03156 -23.71541 -20.75249 -20.23361 -19.83040 -17.68358 -16.78620 -16.12875 -16.06093 -15.68591 -15.21295 -14.56034 -13.78849 -13.56281 -13.38230 -13.29095 -12.94392 -12.88135 -12.45388 -12.39045 -12.14471 -12.02152 -11.52270 -11.32066 -11.10716 -10.91719 -10.18129 -10.01536 -8.47669 -5.96749 1.36493 1.39516 1.52709 2.07276 2.29095 3.19121 3.21613 3.79137 3.83784 3.92580 4.08380 4.27921 4.39215 4.56312 4.69683 4.90272 4.92247 4.94006 5.00131 5.13197 5.15280 5.22080 5.34763 5.40549 5.50082 5.70855 6.00410 6.59127 7.11613 7.57062 8.12778 8.69933 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069446 B = 0.008318 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.094894 B = 3365.373228 C = 3608.048458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 H 0.096 0.904 4 C 0.441 3.559 5 O -0.634 6.634 6 N -0.573 5.573 7 C -0.338 4.338 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.921 5.921 11 Si 0.993 3.007 12 H -0.270 1.270 13 H -0.269 1.269 14 H -0.274 1.274 15 C -0.092 4.092 16 C -0.143 4.143 17 C -0.129 4.129 18 C -0.120 4.120 19 H 0.095 0.905 20 H 0.044 0.956 21 H 0.051 0.949 22 H 0.396 0.604 23 H 0.278 0.722 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 2.619 -11.153 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.114 0.886 4 C 0.229 3.771 5 O -0.522 6.522 6 N -0.209 5.209 7 C -0.468 4.468 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.562 5.562 11 Si 0.817 3.183 12 H -0.196 1.196 13 H -0.193 1.193 14 H -0.199 1.199 15 C -0.111 4.111 16 C -0.180 4.180 17 C -0.167 4.167 18 C -0.157 4.157 19 H 0.114 0.886 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.230 0.770 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.064 2.074 -11.046 11.290 hybrid contribution 0.145 -0.173 1.251 1.272 sum -0.919 1.901 -9.795 10.020 Atomic orbital electron populations 1.21702 0.92204 1.01962 1.03175 1.21206 0.98016 0.99754 0.91750 0.88595 1.21098 0.83893 0.86569 0.85501 1.90457 1.43846 1.30532 1.87374 1.42001 1.46460 1.27800 1.04687 1.19700 1.30711 1.11232 0.85114 0.90540 1.26051 0.96610 0.97108 1.01498 1.69675 1.36823 1.23609 1.26062 0.84931 0.78271 0.78206 0.76938 1.19561 1.19313 1.19876 1.22278 0.96870 0.98963 0.93004 1.22964 0.96382 1.00812 0.97853 1.22793 0.96640 1.02420 0.94817 1.22931 0.97237 1.01456 0.94076 0.88616 0.93638 0.92982 0.77038 0.91250 0.91434 0.90497 0.93984 0.90083 0.89769 0.90221 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 8.91 71.98 0.64 -3.41 16 2 C -0.09 -3.08 2.45 -11.54 -0.03 -3.11 16 3 H 0.10 3.13 7.98 -2.39 -0.02 3.11 16 4 C 0.44 21.98 7.08 87.66 0.62 22.60 16 5 O -0.63 -36.59 15.40 -3.07 -0.05 -36.63 16 6 N -0.57 -30.67 5.18 -306.98 -1.59 -32.26 16 7 C -0.34 -19.87 9.68 84.04 0.81 -19.06 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 10 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16 11 Si 0.99 43.86 29.55 68.60 2.03 45.89 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 C -0.09 -2.98 2.51 -10.27 -0.03 -3.01 16 16 C -0.14 -4.41 7.54 31.18 0.24 -4.17 16 17 C -0.13 -2.90 8.09 31.18 0.25 -2.65 16 18 C -0.12 -2.67 6.75 31.12 0.21 -2.46 16 19 H 0.10 2.16 7.50 -2.39 -0.02 2.14 16 20 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 21 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16 22 H 0.40 20.16 7.32 -92.71 -0.68 19.49 16 23 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.07 2.51 7.91 -2.38 -0.02 2.49 16 25 H 0.08 2.30 7.99 -2.39 -0.02 2.29 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -67.13 253.53 4.30 -62.83 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.44 Total: 26.18 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 3.19 Total: -15.51 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.31 Total: -82.75 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -0.05 Total: -36.63 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.13 4.30 -62.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692741936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.427 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds