Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 5 5 O 1.21294 * 120.00063 * 240.00474 * 4 2 1 6 6 N 1.34777 * 120.00075 * 59.99457 * 4 2 1 7 7 C 1.37097 * 119.99857 * 180.02562 * 6 4 2 8 8 H 1.07995 * 120.00076 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99368 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00449 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99548 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47271 * 59.99751 * 11 9 7 13 13 H 1.48496 * 109.46873 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47134 * 299.99781 * 11 9 7 15 15 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 16 16 C 1.53781 * 113.61476 * 277.49989 * 15 2 1 17 17 C 1.53779 * 87.07812 * 220.01608 * 16 15 2 18 18 C 1.53776 * 113.61550 * 180.02562 * 15 2 1 19 19 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 21 21 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 22 22 H 0.97003 * 119.99308 * 0.02562 * 6 4 2 23 23 H 0.97001 * 120.00144 * 180.02562 * 10 9 7 24 24 H 1.08997 * 112.84405 * 48.80223 * 15 2 1 25 25 H 1.08993 * 113.61731 * 334.56827 * 16 15 2 26 26 H 1.08999 * 113.61144 * 105.46995 * 16 15 2 27 27 H 1.08997 * 113.61529 * 270.88346 * 17 16 15 28 28 H 1.09006 * 113.69033 * 139.99076 * 17 16 15 29 29 H 1.09003 * 113.61248 * 254.53555 * 18 15 2 30 30 H 1.09003 * 113.61486 * 25.42978 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1634 -0.8966 -3.5739 8 1 2.7837 -1.7751 -3.4747 9 6 1.8281 -0.4215 -4.8359 10 7 1.0729 0.6471 -4.9565 11 14 2.4509 -1.3021 -6.3612 12 1 1.9556 -2.7020 -6.3614 13 1 1.9558 -0.6021 -7.5736 14 1 3.9359 -1.3025 -6.3609 15 6 2.0400 -0.7212 1.2493 16 6 2.0719 0.1676 2.5038 17 6 3.4106 -0.5052 2.8504 18 6 3.5737 -0.7762 1.3459 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.1493 0.5389 -2.5435 23 1 0.8385 0.9785 -5.8376 24 1 1.5573 -1.6855 1.4080 25 1 2.1620 1.2312 2.2833 26 1 1.2758 -0.0522 3.2151 27 1 3.3026 -1.4102 3.4482 28 1 4.1548 0.1819 3.2532 29 1 3.9904 -1.7583 1.1219 30 1 4.0742 0.0295 0.8087 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692741937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -37.626276 kcal Electronic energy + Delta-G solvation = -12651.031310 eV Core-core repulsion = 10446.217222 eV Total energy + Delta-G solvation = -2204.814088 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.27146 -37.26826 -33.84101 -32.40333 -30.85648 -25.57235 -25.11365 -24.87888 -22.11442 -19.18555 -18.70833 -17.79770 -15.86414 -15.07739 -14.68316 -14.44211 -13.89934 -13.48728 -12.73924 -12.27280 -12.09489 -11.98968 -11.64416 -11.54307 -11.10108 -11.03269 -10.66551 -10.40877 -10.22698 -10.08813 -9.89106 -9.62123 -9.43640 -8.16965 -7.90203 -6.36756 -3.77224 3.22685 3.27763 3.32432 4.00350 4.21184 4.83182 5.00108 5.05236 5.22065 5.30028 5.51200 5.64808 5.75724 5.90350 5.96679 6.07074 6.09426 6.14934 6.25686 6.39996 6.50974 6.60304 6.71460 6.76921 6.95929 7.59310 8.11958 8.67926 9.23334 9.62417 10.14496 10.81125 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065288 B = 0.008587 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.766811 B = 3260.078227 C = 3533.798926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.079 0.921 4 C 0.448 3.552 5 O -0.591 6.591 6 N -0.565 5.565 7 C -0.300 4.300 8 H 0.101 0.899 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.080 4.080 16 C -0.138 4.138 17 C -0.149 4.149 18 C -0.117 4.117 19 H 0.055 0.945 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.392 0.608 23 H 0.271 0.729 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 1.465 10.001 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.097 0.903 4 C 0.234 3.766 5 O -0.476 6.476 6 N -0.201 5.201 7 C -0.429 4.429 8 H 0.119 0.881 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.756 3.244 12 H -0.200 1.200 13 H -0.210 1.210 14 H -0.200 1.200 15 C -0.098 4.098 16 C -0.175 4.175 17 C -0.186 4.186 18 C -0.154 4.154 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.225 0.775 23 H 0.081 0.919 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.025 0.902 9.879 9.920 hybrid contribution -0.111 0.142 -0.969 0.985 sum -0.135 1.044 8.910 8.972 Atomic orbital electron populations 1.21729 0.94318 1.02067 1.01571 1.21192 0.96411 0.99712 0.94383 0.90290 1.19917 0.85281 0.87171 0.84264 1.90491 1.42143 1.28462 1.86545 1.41915 1.46007 1.27716 1.04420 1.19671 1.29185 1.10752 0.83328 0.88081 1.25245 0.97009 0.96523 0.99201 1.69605 1.36920 1.22967 1.25006 0.85945 0.79096 0.79178 0.80149 1.19969 1.20995 1.19966 1.22202 0.96848 0.98356 0.92435 1.22997 0.97389 0.99271 0.97888 1.22878 0.97570 1.00284 0.97864 1.22708 0.96401 1.02437 0.93885 0.92602 0.92727 0.92197 0.77468 0.91896 0.89516 0.90435 0.92105 0.90762 0.92159 0.91107 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.08 37.16 0.34 -1.91 16 2 C -0.10 -1.74 2.48 -91.77 -0.23 -1.97 16 3 H 0.08 1.36 7.94 -51.93 -0.41 0.95 16 4 C 0.45 10.79 6.91 -10.99 -0.08 10.71 16 5 O -0.59 -16.09 14.42 5.55 0.08 -16.01 16 6 N -0.56 -14.68 5.18 -10.96 -0.06 -14.74 16 7 C -0.30 -8.53 9.68 -14.93 -0.14 -8.68 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 9 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 10 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 11 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 14 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.08 -1.32 2.72 -89.81 -0.24 -1.57 16 16 C -0.14 -1.82 7.63 -25.92 -0.20 -2.01 16 17 C -0.15 -1.96 8.08 -25.94 -0.21 -2.17 16 18 C -0.12 -1.96 6.19 -25.94 -0.16 -2.13 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.99 7.56 -51.93 -0.39 0.60 16 22 H 0.39 9.81 7.32 -40.82 -0.30 9.51 16 23 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.30 7.97 -51.93 -0.41 0.89 16 30 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 LS Contribution 252.97 15.07 3.81 3.81 Total: -1.00 -30.21 252.97 -5.88 -36.09 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.40 Total: 7.99 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -1.02 Total: -9.22 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.67 Total: -39.04 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: 0.08 Total: -16.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.21 -5.88 -36.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692741937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.537 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds