Wall clock time and date at job start Mon Mar 30 2020 02:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50697 * 109.47466 * 240.00036 * 2 1 3 5 5 O 1.21294 * 120.00063 * 240.00474 * 4 2 1 6 6 N 1.34777 * 120.00075 * 59.99457 * 4 2 1 7 7 C 1.37097 * 119.99857 * 180.02562 * 6 4 2 8 8 H 1.07995 * 120.00076 * 0.02562 * 7 6 4 9 9 C 1.38957 * 119.99368 * 180.02562 * 7 6 4 10 10 N 1.31408 * 120.00449 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99548 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47271 * 59.99751 * 11 9 7 13 13 H 1.48496 * 109.46873 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47134 * 299.99781 * 11 9 7 15 15 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 16 16 C 1.53781 * 113.61476 * 277.49989 * 15 2 1 17 17 C 1.53779 * 87.07812 * 220.01608 * 16 15 2 18 18 C 1.53776 * 113.61550 * 180.02562 * 15 2 1 19 19 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 21 21 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 22 22 H 0.97003 * 119.99308 * 0.02562 * 6 4 2 23 23 H 0.97001 * 120.00144 * 180.02562 * 10 9 7 24 24 H 1.08997 * 112.84405 * 48.80223 * 15 2 1 25 25 H 1.08993 * 113.61731 * 334.56827 * 16 15 2 26 26 H 1.08999 * 113.61144 * 105.46995 * 16 15 2 27 27 H 1.08997 * 113.61529 * 270.88346 * 17 16 15 28 28 H 1.09006 * 113.69033 * 139.99076 * 17 16 15 29 29 H 1.09003 * 113.61248 * 254.53555 * 18 15 2 30 30 H 1.09003 * 113.61486 * 25.42978 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1634 -0.8966 -3.5739 8 1 2.7837 -1.7751 -3.4747 9 6 1.8281 -0.4215 -4.8359 10 7 1.0729 0.6471 -4.9565 11 14 2.4509 -1.3021 -6.3612 12 1 1.9556 -2.7020 -6.3614 13 1 1.9558 -0.6021 -7.5736 14 1 3.9359 -1.3025 -6.3609 15 6 2.0400 -0.7212 1.2493 16 6 2.0719 0.1676 2.5038 17 6 3.4106 -0.5052 2.8504 18 6 3.5737 -0.7762 1.3459 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.1493 0.5389 -2.5435 23 1 0.8385 0.9785 -5.8376 24 1 1.5573 -1.6855 1.4080 25 1 2.1620 1.2312 2.2833 26 1 1.2758 -0.0522 3.2151 27 1 3.3026 -1.4102 3.4482 28 1 4.1548 0.1819 3.2532 29 1 3.9904 -1.7583 1.1219 30 1 4.0742 0.0295 0.8087 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692741937.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:24 Heat of formation + Delta-G solvation = -56.934720 kcal Electronic energy + Delta-G solvation = -12651.868586 eV Core-core repulsion = 10446.217222 eV Total energy + Delta-G solvation = -2205.651365 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84493 -38.89440 -35.91883 -34.01221 -32.80536 -27.20984 -26.69537 -26.15452 -23.69257 -20.69656 -20.29793 -19.78936 -17.65737 -16.76239 -16.14933 -16.09293 -15.63824 -15.21570 -14.55141 -13.62919 -13.58089 -13.37793 -13.22671 -12.94393 -12.90679 -12.44600 -12.43480 -12.13933 -12.04422 -11.50067 -11.34346 -11.14498 -10.87289 -10.10182 -9.99805 -8.46493 -5.95300 1.38492 1.39482 1.50861 2.09329 2.29439 3.19799 3.22110 3.79999 3.85927 3.92658 4.13315 4.29373 4.39690 4.55597 4.66022 4.91535 4.94508 4.94997 4.99955 5.13331 5.16824 5.26359 5.34843 5.41606 5.50762 5.70605 6.01511 6.60708 7.12989 7.58863 8.14747 8.70938 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065288 B = 0.008587 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.766811 B = 3260.078227 C = 3533.798926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.095 0.905 4 C 0.442 3.558 5 O -0.628 6.628 6 N -0.575 5.575 7 C -0.337 4.337 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.922 5.922 11 Si 0.992 3.008 12 H -0.272 1.272 13 H -0.269 1.269 14 H -0.272 1.272 15 C -0.090 4.090 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.133 4.133 19 H 0.045 0.955 20 H 0.094 0.906 21 H 0.051 0.949 22 H 0.395 0.605 23 H 0.278 0.722 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.997 2.363 11.006 11.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.113 0.887 4 C 0.230 3.770 5 O -0.516 6.516 6 N -0.211 5.211 7 C -0.466 4.466 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.563 5.563 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.193 1.193 14 H -0.198 1.198 15 C -0.109 4.109 16 C -0.156 4.156 17 C -0.170 4.170 18 C -0.170 4.170 19 H 0.064 0.936 20 H 0.112 0.888 21 H 0.070 0.930 22 H 0.229 0.771 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.613 1.820 10.898 11.066 hybrid contribution 0.090 -0.157 -1.268 1.281 sum -0.523 1.662 9.630 9.786 Atomic orbital electron populations 1.21703 0.92288 1.01951 1.03119 1.21223 0.97986 0.99759 0.91893 0.88676 1.21071 0.83891 0.86651 0.85393 1.90463 1.43541 1.30263 1.87291 1.42000 1.46511 1.27918 1.04704 1.19657 1.30669 1.11217 0.85089 0.90484 1.26042 0.96709 0.97081 1.01493 1.69668 1.36993 1.23527 1.26072 0.85005 0.78517 0.78141 0.76763 1.19745 1.19304 1.19756 1.22299 0.96228 0.98889 0.93465 1.22926 0.97883 0.99107 0.95662 1.22823 0.98164 1.01200 0.94827 1.22748 0.96589 1.00387 0.97298 0.93575 0.88751 0.93019 0.77121 0.91291 0.90554 0.89157 0.89657 0.89645 0.90318 0.94078 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.05 9.08 71.98 0.65 -3.39 16 2 C -0.09 -3.11 2.48 -11.54 -0.03 -3.14 16 3 H 0.10 3.10 7.94 -2.39 -0.02 3.09 16 4 C 0.44 21.79 6.91 87.66 0.61 22.40 16 5 O -0.63 -35.58 14.42 -3.07 -0.04 -35.62 16 6 N -0.57 -30.64 5.18 -306.98 -1.59 -32.23 16 7 C -0.34 -19.72 9.68 84.04 0.81 -18.91 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 10 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 11 Si 0.99 43.87 29.55 68.60 2.03 45.90 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C -0.09 -2.87 2.72 -10.27 -0.03 -2.90 16 16 C -0.12 -2.68 7.63 31.12 0.24 -2.44 16 17 C -0.13 -3.14 8.08 31.10 0.25 -2.89 16 18 C -0.13 -4.44 6.19 31.10 0.19 -4.25 16 19 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 21 H 0.05 1.65 7.56 -2.39 -0.02 1.63 16 22 H 0.39 20.12 7.32 -92.71 -0.68 19.44 16 23 H 0.28 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 25 H 0.09 1.85 7.96 -2.39 -0.02 1.84 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 30 H 0.06 2.15 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -66.33 252.97 4.28 -62.05 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.44 Total: 26.33 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.17 Total: -15.81 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.31 Total: -82.84 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.04 Total: -35.62 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.33 4.28 -62.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692741937.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.114 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds