Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.53002 * 109.47088 * 239.99438 * 2 1 3 5 5 C 1.50704 * 109.46747 * 65.53733 * 4 2 1 6 6 H 1.07997 * 120.00088 * 5.30352 * 5 4 2 7 7 C 1.37878 * 119.99541 * 185.30192 * 5 4 2 8 8 N 1.31512 * 120.00005 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99686 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47298 * 60.00154 * 9 7 5 11 11 H 1.48504 * 109.47187 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47315 * 299.99749 * 9 7 5 13 13 N 1.46906 * 109.46760 * 119.99880 * 2 1 3 14 14 C 1.48653 * 110.99722 * 296.77968 * 13 2 1 15 15 C 1.54373 * 104.15110 * 202.08686 * 14 13 2 16 16 C 1.51831 * 105.31632 * 23.37870 * 15 14 13 17 17 O 1.20764 * 127.13399 * 180.31571 * 16 15 14 18 18 C 1.48772 * 110.90476 * 182.10430 * 13 2 1 19 19 H 1.08997 * 109.47118 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46973 * 300.00606 * 1 2 3 21 21 H 1.09006 * 109.46398 * 60.00384 * 1 2 3 22 22 H 1.09000 * 109.46816 * 185.53693 * 4 2 1 23 23 H 1.08997 * 109.47428 * 305.53730 * 4 2 1 24 24 H 0.97003 * 119.99591 * 179.97438 * 8 7 5 25 25 H 1.09000 * 110.49544 * 83.41940 * 14 13 2 26 26 H 1.08995 * 110.49375 * 320.75398 * 14 13 2 27 27 H 1.09000 * 110.27680 * 264.41693 * 15 14 13 28 28 H 1.09001 * 110.35268 * 142.38057 * 15 14 13 29 29 H 1.09003 * 110.49421 * 39.81530 * 18 13 2 30 30 H 1.09001 * 110.32543 * 277.45640 * 18 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6527 0.0637 -2.4759 6 1 1.1743 1.0264 -2.3721 7 6 1.9093 -0.4470 -3.7306 8 7 2.4914 -1.6195 -3.8569 9 14 1.4285 0.5258 -5.2511 10 1 2.1324 1.8333 -5.2452 11 1 1.8094 -0.2365 -6.4673 12 1 -0.0389 0.7535 -5.2496 13 7 2.0196 -0.6925 1.1995 14 6 1.6076 0.0252 2.4344 15 6 2.6195 -0.4466 3.5005 16 6 3.8407 -0.9010 2.7212 17 8 4.8672 -1.3503 3.1714 18 6 3.5060 -0.6671 1.2576 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 3.1255 -0.8080 -1.2009 23 1 1.5980 -1.7164 -1.3001 24 1 2.6716 -1.9789 -4.7397 25 1 0.5939 -0.2564 2.7193 26 1 1.6792 1.1033 2.2910 27 1 2.2058 -1.2772 4.0725 28 1 2.8806 0.3764 4.1658 29 1 3.8842 0.3021 0.9323 30 1 3.9227 -1.4638 0.6413 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781672.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -39.896476 kcal Electronic energy + Delta-G solvation = -12577.216669 eV Core-core repulsion = 10372.304138 eV Total energy + Delta-G solvation = -2204.912531 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.70443 -37.45866 -33.91590 -31.97218 -29.19689 -27.89547 -26.17092 -23.67444 -21.71130 -19.44870 -19.29586 -16.73864 -15.87886 -15.61264 -14.77398 -14.56967 -14.08922 -13.70672 -13.35208 -12.69095 -12.56610 -12.02822 -11.71407 -11.53868 -11.27324 -11.10807 -10.90054 -10.79896 -10.42513 -9.96369 -9.36079 -9.28872 -9.17669 -8.37469 -8.11411 -6.02454 -4.05061 2.01293 3.30991 3.36253 3.37656 4.17418 4.38309 4.50676 4.74942 4.97976 5.16246 5.33220 5.62943 5.68699 5.80849 5.83301 5.96625 6.04367 6.19176 6.24496 6.54241 6.73075 7.03827 7.18919 7.34551 7.57701 7.66616 7.80149 8.01187 8.37944 9.00925 9.58452 11.08737 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055668 B = 0.008442 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.864077 B = 3316.045768 C = 3653.778544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.073 3.927 3 H 0.033 0.967 4 C 0.031 3.969 5 C -0.521 4.521 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.496 5.496 14 C 0.031 3.969 15 C -0.185 4.185 16 C 0.375 3.625 17 O -0.451 6.451 18 C -0.023 4.023 19 H 0.056 0.944 20 H 0.032 0.968 21 H 0.068 0.932 22 H 0.014 0.986 23 H 0.030 0.970 24 H 0.261 0.739 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.102 3.853 10.674 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.034 4.034 3 H 0.051 0.949 4 C -0.006 4.006 5 C -0.559 4.559 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.222 5.222 14 C -0.098 4.098 15 C -0.222 4.222 16 C 0.250 3.750 17 O -0.323 6.323 18 C -0.151 4.151 19 H 0.075 0.925 20 H 0.051 0.949 21 H 0.087 0.913 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.106 0.894 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.721 2.938 10.740 11.267 hybrid contribution -0.044 1.386 -0.998 1.709 sum -1.766 4.324 9.742 10.804 Atomic orbital electron populations 1.21699 0.94749 1.01828 1.00321 1.22131 0.95591 0.95394 0.90262 0.94861 1.19162 0.96069 0.96360 0.89054 1.21122 1.39672 1.04314 0.90821 0.92712 1.24990 0.95244 0.94972 0.99068 1.69957 1.42232 1.17404 1.23489 0.86673 0.78957 0.80005 0.82441 1.20329 1.21281 1.20229 1.65863 1.04984 1.48905 1.02442 1.23095 0.99139 0.96959 0.90567 1.22876 0.96544 1.03179 0.99650 1.25061 0.86102 0.71143 0.92716 1.90400 1.28601 1.34880 1.78441 1.23591 0.91836 1.03886 0.95830 0.92514 0.94927 0.91282 0.96811 0.95182 0.92891 0.89416 0.93379 0.87954 0.88513 0.90069 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.95 37.16 0.33 -1.99 16 2 C 0.07 1.45 1.84 -67.71 -0.12 1.33 16 3 H 0.03 0.66 7.96 -51.93 -0.41 0.25 16 4 C 0.03 0.77 4.46 -27.88 -0.12 0.65 16 5 C -0.52 -14.14 8.31 -34.44 -0.29 -14.42 16 6 H 0.05 1.43 7.30 -52.49 -0.38 1.05 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.50 -8.52 5.24 -223.29 -1.17 -9.69 16 14 C 0.03 0.40 5.48 -2.13 -0.01 0.39 16 15 C -0.18 -2.16 6.89 -26.61 -0.18 -2.35 16 16 C 0.37 5.68 8.08 -27.86 -0.23 5.46 16 17 O -0.45 -8.01 17.99 6.00 0.11 -7.90 16 18 C -0.02 -0.38 5.31 -3.32 -0.02 -0.40 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 20 H 0.03 0.48 7.06 -51.93 -0.37 0.12 16 21 H 0.07 1.33 7.10 -51.93 -0.37 0.96 16 22 H 0.01 0.36 6.73 -51.93 -0.35 0.01 16 23 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.09 1.05 7.76 -51.93 -0.40 0.65 16 26 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 27 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.31 7.94 -51.93 -0.41 0.90 16 30 H 0.11 2.05 7.56 -51.93 -0.39 1.65 16 LS Contribution 250.34 15.07 3.77 3.77 Total: -1.00 -30.00 250.34 -6.64 -36.64 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -4.32 Total: -3.61 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.74 Total: -9.78 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -0.43 Total: -35.34 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.11 Total: -7.90 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.00 -6.64 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781672.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.260 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds