Wall clock time and date at job start Mon Mar 30 2020 02:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47458 * 2 1 4 4 C 1.50700 * 109.47287 * 240.00062 * 2 1 3 5 5 O 1.20769 * 119.99866 * 119.99683 * 4 2 1 6 6 N 1.46900 * 109.47479 * 120.00066 * 2 1 3 7 7 C 1.46900 * 110.99804 * 295.00226 * 6 2 1 8 8 C 1.50698 * 109.47166 * 201.11041 * 7 6 2 9 9 H 1.08000 * 120.00182 * 5.46791 * 8 7 6 10 10 C 1.37879 * 120.00116 * 185.47118 * 8 7 6 11 11 N 1.31515 * 119.99899 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00226 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46956 * 59.99886 * 12 10 8 14 14 H 1.48496 * 109.47523 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47093 * 300.00372 * 12 10 8 16 16 C 1.46900 * 110.99814 * 58.95145 * 6 2 1 17 17 C 1.53001 * 117.49823 * 166.90498 * 16 6 2 18 18 C 1.52996 * 117.49929 * 98.28080 * 16 6 2 19 19 H 1.09003 * 109.47417 * 300.00098 * 1 2 3 20 20 H 1.09001 * 109.47032 * 59.99603 * 1 2 3 21 21 H 1.08994 * 109.47061 * 179.97438 * 1 2 3 22 22 H 1.08000 * 120.00085 * 300.00572 * 4 2 1 23 23 H 1.09005 * 109.47154 * 321.10996 * 7 6 2 24 24 H 1.09006 * 109.47530 * 81.10761 * 7 6 2 25 25 H 0.96998 * 119.99910 * 179.97438 * 11 10 8 26 26 H 1.09003 * 115.56302 * 312.59531 * 16 6 2 27 27 H 1.09004 * 117.49754 * 145.02304 * 17 16 6 28 28 H 1.09000 * 117.49585 * 0.02562 * 17 16 6 29 29 H 1.09006 * 117.49511 * 0.02562 * 18 16 6 30 30 H 1.08996 * 117.50060 * 214.97809 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7266 -0.1234 -2.0254 6 7 2.0197 -0.6925 1.1994 7 6 1.6487 0.0391 2.4180 8 6 2.5609 -0.3687 3.5461 9 1 3.3929 -1.0304 3.3556 10 6 2.3333 0.1029 4.8216 11 7 1.3205 0.9090 5.0536 12 14 3.4636 -0.4032 6.2201 13 1 4.8505 0.0334 5.9183 14 1 3.0075 0.2351 7.4809 15 1 3.4317 -1.8800 6.3726 16 6 1.5283 -2.0761 1.2459 17 6 2.1822 -3.0245 2.2529 18 6 2.4717 -3.1775 0.7583 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7714 -1.7443 -1.4014 23 1 1.7451 1.1106 2.2421 24 1 0.6173 -0.1943 2.6823 25 1 1.1601 1.2405 5.9510 26 1 0.4632 -2.2037 1.0526 27 1 1.5472 -3.7760 2.7221 28 1 2.9766 -2.6216 2.8811 29 1 3.4571 -2.8755 0.4034 30 1 2.0272 -4.0298 0.2443 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698632819.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:49 Heat of formation + Delta-G solvation = -0.776257 kcal Electronic energy + Delta-G solvation = -12823.107078 eV Core-core repulsion = 10619.890927 eV Total energy + Delta-G solvation = -2203.216151 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.21249 -37.54279 -34.20288 -32.76740 -29.72385 -26.51084 -24.61799 -22.35157 -21.65422 -21.19900 -18.80658 -16.86431 -15.90632 -15.17829 -14.78681 -14.60802 -14.13692 -13.90748 -13.09642 -12.52799 -12.30675 -12.23051 -11.89136 -11.27422 -10.98423 -10.94857 -10.80165 -10.62216 -10.04825 -9.74201 -9.49476 -9.22055 -8.97220 -8.42746 -7.42376 -6.04391 -4.04624 2.27430 3.32014 3.36563 3.39174 4.37541 4.46230 4.64056 4.74342 5.23423 5.30989 5.46436 5.55537 5.63883 5.71231 5.88725 6.01384 6.11601 6.23294 6.31658 6.48845 6.63623 6.95605 7.12029 7.29688 7.64760 7.78898 8.02629 8.08855 8.45674 9.00661 9.58144 11.06147 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041108 B = 0.010880 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.968686 B = 2572.967105 C = 2852.082882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.017 3.983 3 H 0.098 0.902 4 C 0.368 3.632 5 O -0.472 6.472 6 N -0.496 5.496 7 C 0.198 3.802 8 C -0.501 4.501 9 H 0.067 0.933 10 C 0.055 3.945 11 N -0.900 5.900 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.276 1.276 16 C 0.011 3.989 17 C -0.150 4.150 18 C -0.192 4.192 19 H 0.074 0.926 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.026 0.974 24 H 0.005 0.995 25 H 0.261 0.739 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -5.830 -7.058 9.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.093 4.093 3 H 0.116 0.884 4 C 0.223 3.777 5 O -0.342 6.342 6 N -0.222 5.222 7 C 0.073 3.927 8 C -0.539 4.539 9 H 0.085 0.915 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.098 4.098 17 C -0.187 4.187 18 C -0.230 4.230 19 H 0.093 0.907 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.104 0.896 23 H 0.044 0.956 24 H 0.022 0.978 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.225 -5.394 -7.371 9.216 hybrid contribution -0.507 -0.178 1.064 1.192 sum -1.732 -5.572 -6.307 8.592 Atomic orbital electron populations 1.22324 0.96078 1.02461 1.02889 1.22635 0.94351 1.00108 0.92215 0.88399 1.26027 0.74705 0.92735 0.84200 1.90338 1.28741 1.69796 1.45340 1.62241 1.57490 1.00200 1.02259 1.19740 0.95576 0.92860 0.84485 1.21147 1.12312 1.28734 0.91743 0.91524 1.24966 0.95528 0.95328 0.98756 1.69937 1.29105 1.33295 1.21598 0.86600 0.81054 0.78744 0.81272 1.20218 1.21427 1.20190 1.22253 0.94249 0.87334 1.05950 1.23098 1.04039 1.00052 0.91521 1.23117 1.01090 0.99814 0.98948 0.90705 0.92711 0.92008 0.89634 0.95642 0.97759 0.92897 0.90270 0.89960 0.86397 0.89033 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.62 37.16 0.32 -2.37 16 2 C 0.02 0.29 2.81 -68.87 -0.19 0.10 16 3 H 0.10 1.84 7.92 -51.93 -0.41 1.43 16 4 C 0.37 5.89 9.74 36.01 0.35 6.24 16 5 O -0.47 -8.91 17.90 5.99 0.11 -8.80 16 6 N -0.50 -10.11 4.54 -221.52 -1.01 -11.11 16 7 C 0.20 4.87 3.88 -4.98 -0.02 4.85 16 8 C -0.50 -13.41 7.82 -34.44 -0.27 -13.68 16 9 H 0.07 1.76 5.87 -52.49 -0.31 1.46 16 10 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 11 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 12 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 C 0.01 0.20 3.80 -67.71 -0.26 -0.06 16 17 C -0.15 -2.69 9.51 -26.73 -0.25 -2.94 16 18 C -0.19 -2.93 9.41 -26.73 -0.25 -3.19 16 19 H 0.07 1.27 7.03 -51.93 -0.37 0.90 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.06 0.85 6.23 -51.93 -0.32 0.52 16 22 H 0.09 1.14 7.15 -52.49 -0.38 0.77 16 23 H 0.03 0.68 7.79 -51.93 -0.40 0.27 16 24 H 0.00 0.12 7.42 -51.93 -0.39 -0.27 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.08 1.32 6.19 -51.93 -0.32 0.99 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.12 2.44 5.48 -51.93 -0.28 2.15 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 249.59 15.07 3.76 3.76 Total: -1.00 -29.32 249.59 -6.10 -35.42 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.00 Total: -0.53 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -0.67 Total: -9.62 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.27 Total: -36.38 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.11 Total: -8.80 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.32 -6.10 -35.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698632819.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.644 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds