Wall clock time and date at job start Mon Mar 30 2020 02:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47458 * 2 1 4 4 C 1.50700 * 109.47287 * 240.00062 * 2 1 3 5 5 O 1.20769 * 119.99866 * 119.99683 * 4 2 1 6 6 N 1.46900 * 109.47479 * 120.00066 * 2 1 3 7 7 C 1.46900 * 110.99804 * 295.00226 * 6 2 1 8 8 C 1.50698 * 109.47166 * 201.11041 * 7 6 2 9 9 H 1.08000 * 120.00182 * 5.46791 * 8 7 6 10 10 C 1.37879 * 120.00116 * 185.47118 * 8 7 6 11 11 N 1.31515 * 119.99899 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00226 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46956 * 59.99886 * 12 10 8 14 14 H 1.48496 * 109.47523 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47093 * 300.00372 * 12 10 8 16 16 C 1.46900 * 110.99814 * 58.95145 * 6 2 1 17 17 C 1.53001 * 117.49823 * 166.90498 * 16 6 2 18 18 C 1.52996 * 117.49929 * 98.28080 * 16 6 2 19 19 H 1.09003 * 109.47417 * 300.00098 * 1 2 3 20 20 H 1.09001 * 109.47032 * 59.99603 * 1 2 3 21 21 H 1.08994 * 109.47061 * 179.97438 * 1 2 3 22 22 H 1.08000 * 120.00085 * 300.00572 * 4 2 1 23 23 H 1.09005 * 109.47154 * 321.10996 * 7 6 2 24 24 H 1.09006 * 109.47530 * 81.10761 * 7 6 2 25 25 H 0.96998 * 119.99910 * 179.97438 * 11 10 8 26 26 H 1.09003 * 115.56302 * 312.59531 * 16 6 2 27 27 H 1.09004 * 117.49754 * 145.02304 * 17 16 6 28 28 H 1.09000 * 117.49585 * 0.02562 * 17 16 6 29 29 H 1.09006 * 117.49511 * 0.02562 * 18 16 6 30 30 H 1.08996 * 117.50060 * 214.97809 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7266 -0.1234 -2.0254 6 7 2.0197 -0.6925 1.1994 7 6 1.6487 0.0391 2.4180 8 6 2.5609 -0.3687 3.5461 9 1 3.3929 -1.0304 3.3556 10 6 2.3333 0.1029 4.8216 11 7 1.3205 0.9090 5.0536 12 14 3.4636 -0.4032 6.2201 13 1 4.8505 0.0334 5.9183 14 1 3.0075 0.2351 7.4809 15 1 3.4317 -1.8800 6.3726 16 6 1.5283 -2.0761 1.2459 17 6 2.1822 -3.0245 2.2529 18 6 2.4717 -3.1775 0.7583 19 1 -0.3634 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 1.7714 -1.7443 -1.4014 23 1 1.7451 1.1106 2.2421 24 1 0.6173 -0.1943 2.6823 25 1 1.1601 1.2405 5.9510 26 1 0.4632 -2.2037 1.0526 27 1 1.5472 -3.7760 2.7221 28 1 2.9766 -2.6216 2.8811 29 1 3.4571 -2.8755 0.4034 30 1 2.0272 -4.0298 0.2443 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698632819.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:48 Heat of formation + Delta-G solvation = -20.599329 kcal Electronic energy + Delta-G solvation = -12823.966671 eV Core-core repulsion = 10619.890927 eV Total energy + Delta-G solvation = -2204.075744 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.63220 -39.00130 -35.64684 -34.77589 -31.40164 -28.29463 -26.09488 -24.10347 -22.98398 -22.67837 -20.25441 -18.71933 -17.40652 -16.86466 -16.41330 -16.07219 -15.66636 -15.39579 -14.54941 -14.30725 -13.93581 -13.70800 -13.38196 -13.01312 -12.78307 -12.53164 -12.40306 -12.17186 -11.84287 -11.22447 -11.12704 -10.84784 -10.52594 -10.41348 -9.04204 -8.15192 -6.22388 0.96535 1.42631 1.44700 1.51998 2.42477 3.03950 3.17314 3.26935 3.38203 3.90986 4.13837 4.24126 4.31746 4.46412 4.61063 4.66913 4.88627 4.94992 4.99864 5.13341 5.20153 5.23866 5.42273 5.52822 5.77207 6.07567 6.32645 6.43495 6.59052 6.91643 7.45058 8.94958 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041108 B = 0.010880 C = 0.009815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.968686 B = 2572.967105 C = 2852.082882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.010 3.990 3 H 0.072 0.928 4 C 0.384 3.616 5 O -0.501 6.501 6 N -0.507 5.507 7 C 0.216 3.784 8 C -0.508 4.508 9 H 0.067 0.933 10 C 0.003 3.997 11 N -0.936 5.936 12 Si 0.959 3.041 13 H -0.274 1.274 14 H -0.287 1.287 15 H -0.264 1.264 16 C -0.008 4.008 17 C -0.171 4.171 18 C -0.153 4.153 19 H 0.047 0.953 20 H 0.078 0.922 21 H 0.082 0.918 22 H 0.133 0.867 23 H -0.007 1.007 24 H -0.018 1.018 25 H 0.262 0.738 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -7.897 -8.007 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.241 3.759 5 O -0.373 6.373 6 N -0.233 5.233 7 C 0.091 3.909 8 C -0.546 4.546 9 H 0.085 0.915 10 C -0.195 4.195 11 N -0.577 5.577 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.213 1.213 15 H -0.189 1.189 16 C -0.117 4.117 17 C -0.208 4.208 18 C -0.190 4.190 19 H 0.066 0.934 20 H 0.097 0.903 21 H 0.101 0.899 22 H 0.149 0.851 23 H 0.011 0.989 24 H 0.000 1.000 25 H 0.070 0.930 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.129 -7.480 -8.338 11.258 hybrid contribution -0.542 0.466 1.319 1.500 sum -1.671 -7.014 -7.019 10.063 Atomic orbital electron populations 1.22215 0.94031 1.03778 1.02732 1.22697 0.96119 0.98982 0.92161 0.91021 1.26255 0.73332 0.93799 0.82496 1.90348 1.30096 1.70655 1.46158 1.62075 1.58390 1.01502 1.01381 1.19309 0.93905 0.91454 0.86277 1.21480 1.12390 1.28189 0.92569 0.91489 1.25797 0.96933 0.95344 1.01393 1.70067 1.30890 1.34631 1.22096 0.85582 0.78978 0.78911 0.78049 1.19903 1.21273 1.18916 1.22443 0.95788 0.86028 1.07404 1.23047 1.03858 1.00937 0.92992 1.23178 1.00115 0.99100 0.96630 0.93395 0.90308 0.89891 0.85086 0.98921 1.00023 0.92951 0.88545 0.88374 0.89709 0.89578 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 8.62 71.98 0.62 -4.26 16 2 C 0.01 0.34 2.81 44.17 0.12 0.47 16 3 H 0.07 2.80 7.92 -2.39 -0.02 2.78 16 4 C 0.38 11.30 9.74 71.24 0.69 11.99 16 5 O -0.50 -18.03 17.90 -1.48 -0.03 -18.05 16 6 N -0.51 -20.57 4.54 -854.77 -3.88 -24.45 16 7 C 0.22 11.02 3.88 85.56 0.33 11.35 16 8 C -0.51 -27.75 7.82 25.60 0.20 -27.55 16 9 H 0.07 3.60 5.87 -2.91 -0.02 3.58 16 10 C 0.00 0.16 5.46 84.66 0.46 0.62 16 11 N -0.94 -55.44 13.29 21.45 0.28 -55.15 16 12 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 16 C -0.01 -0.27 3.80 44.91 0.17 -0.10 16 17 C -0.17 -5.83 9.51 30.60 0.29 -5.54 16 18 C -0.15 -4.07 9.41 30.59 0.29 -3.78 16 19 H 0.05 1.64 7.03 -2.39 -0.02 1.63 16 20 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 21 H 0.08 2.03 6.23 -2.39 -0.01 2.02 16 22 H 0.13 2.81 7.15 -2.91 -0.02 2.79 16 23 H -0.01 -0.41 7.79 -2.38 -0.02 -0.43 16 24 H -0.02 -0.99 7.42 -2.38 -0.02 -1.00 16 25 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.10 2.90 6.19 -2.39 -0.01 2.88 16 27 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 28 H 0.08 3.48 5.48 -2.39 -0.01 3.46 16 29 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -64.65 249.59 2.71 -61.94 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.12 Total: 6.72 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.18 Total: -16.80 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.60 Total: -79.61 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.03 Total: -18.05 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -64.65 2.71 -61.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698632819.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.342 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds