Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 115.55953 * 2 1 4 4 C 1.52998 * 117.50069 * 214.30793 * 2 1 3 5 5 C 1.53006 * 117.49928 * 145.68274 * 2 1 3 6 6 C 1.53001 * 117.51458 * 0.02562 * 5 2 1 7 7 C 1.52992 * 117.49512 * 214.98396 * 5 2 1 8 8 N 1.46503 * 109.46749 * 226.10714 * 7 5 2 9 9 C 1.34778 * 120.00039 * 174.64583 * 8 7 5 10 10 O 1.21694 * 120.00120 * 0.02562 * 9 8 7 11 11 C 1.46369 * 120.00024 * 180.02562 * 9 8 7 12 12 H 1.08002 * 120.00536 * 359.97438 * 11 9 8 13 13 C 1.40053 * 120.00052 * 179.72608 * 11 9 8 14 14 N 1.30671 * 119.99773 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00154 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47070 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47315 * 119.99706 * 15 13 11 18 18 H 1.48504 * 109.47258 * 239.99593 * 15 13 11 19 19 H 1.09003 * 109.47363 * 274.31290 * 1 2 3 20 20 H 1.09000 * 109.47632 * 34.31639 * 1 2 3 21 21 H 1.09002 * 109.46991 * 154.31450 * 1 2 3 22 22 H 1.08996 * 117.49951 * 145.02171 * 4 2 1 23 23 H 1.08997 * 117.51947 * 359.97438 * 4 2 1 24 24 H 1.08998 * 109.46925 * 280.01078 * 6 5 2 25 25 H 1.08995 * 109.47197 * 40.01796 * 6 5 2 26 26 H 1.09001 * 109.46385 * 160.01844 * 6 5 2 27 27 H 1.09006 * 109.47429 * 106.11322 * 7 5 2 28 28 H 1.08993 * 109.47685 * 346.10768 * 7 5 2 29 29 H 0.96994 * 120.00272 * 354.64525 * 8 7 5 30 30 H 0.97008 * 119.99884 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2365 -1.1209 0.7652 6 6 1.3592 -2.1566 1.4714 7 6 3.5489 -0.7757 1.4716 8 7 4.5449 -1.8111 1.1846 9 6 5.8137 -1.6632 1.6145 10 8 6.1319 -0.6699 2.2413 11 6 6.8089 -2.6973 1.3273 12 1 6.5265 -3.5791 0.7713 13 6 8.1288 -2.5410 1.7690 14 7 8.4718 -1.4716 2.4370 15 14 9.3987 -3.8611 1.4031 16 1 8.7611 -4.9630 0.6385 17 1 10.5037 -3.2765 0.6015 18 1 9.9409 -4.3936 2.6790 19 1 -0.3634 0.0773 1.0248 20 1 -0.3634 0.8488 -0.5793 21 1 -0.3633 -0.9261 -0.4454 22 1 3.1715 -0.8752 -1.2682 23 1 1.6116 -1.8589 -1.2679 24 1 1.0042 -1.7476 2.4172 25 1 0.5064 -2.4024 0.8387 26 1 1.9424 -3.0577 1.6613 27 1 3.3796 -0.7226 2.5471 28 1 3.9122 0.1873 1.1130 29 1 4.2912 -2.6030 0.6853 30 1 9.3860 -1.3631 2.7427 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704021892.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -57.233042 kcal Electronic energy + Delta-G solvation = -12375.953801 eV Core-core repulsion = 10170.289500 eV Total energy + Delta-G solvation = -2205.664301 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.16580 -38.76241 -34.95058 -34.23797 -30.56254 -28.92405 -28.55510 -26.50236 -22.36945 -21.30454 -20.07525 -18.92470 -17.48594 -16.57744 -16.00446 -15.91204 -15.41268 -14.60257 -14.41398 -14.21231 -13.76237 -13.19541 -13.12169 -13.00643 -12.85499 -12.74049 -12.63481 -12.27096 -12.00278 -11.87634 -10.96204 -10.76120 -10.59594 -9.84517 -9.47574 -8.30135 -6.87011 1.39860 1.40283 1.58628 2.23986 2.46017 2.65512 3.31192 3.59170 3.73087 3.82043 4.01606 4.10916 4.44835 4.63068 4.76311 4.90882 4.91922 4.98252 5.02671 5.05507 5.16037 5.23252 5.31013 5.38630 5.51480 5.86936 6.23152 6.27637 6.85493 7.55851 8.48277 8.66650 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.072767 B = 0.007408 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.696869 B = 3778.963354 C = 3912.523789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.137 4.137 3 H 0.091 0.909 4 C -0.160 4.160 5 C -0.146 4.146 6 C -0.105 4.105 7 C 0.172 3.828 8 N -0.748 5.748 9 C 0.534 3.466 10 O -0.637 6.637 11 C -0.573 4.573 12 H 0.088 0.912 13 C 0.026 3.974 14 N -0.824 5.824 15 Si 1.002 2.998 16 H -0.246 1.246 17 H -0.268 1.268 18 H -0.268 1.268 19 H 0.063 0.937 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.118 0.882 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.025 0.975 29 H 0.394 0.606 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 -3.273 -6.125 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.156 4.156 3 H 0.109 0.891 4 C -0.197 4.197 5 C -0.146 4.146 6 C -0.161 4.161 7 C 0.047 3.953 8 N -0.402 5.402 9 C 0.338 3.662 10 O -0.525 6.525 11 C -0.609 4.609 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.454 5.454 15 Si 0.820 3.180 16 H -0.169 1.169 17 H -0.193 1.193 18 H -0.193 1.193 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.095 0.905 23 H 0.136 0.864 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.228 0.772 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.687 -2.439 -5.577 14.072 hybrid contribution 0.831 -0.344 -0.034 0.900 sum -11.856 -2.783 -5.611 13.409 Atomic orbital electron populations 1.21345 0.90397 1.02866 1.02411 1.22558 0.96785 0.93549 1.02715 0.89070 1.23168 1.02191 1.01895 0.92458 1.21715 0.96142 1.02438 0.94330 1.21251 0.98317 0.96434 1.00144 1.20358 0.86947 0.90668 0.97327 1.45752 1.09183 1.23765 1.61495 1.18696 0.81821 0.86990 0.78653 1.90545 1.80836 1.34479 1.46591 1.21468 0.94509 1.06299 1.38659 0.89397 1.27036 1.01500 0.98247 0.92039 1.70210 1.19260 1.27644 1.28298 0.84923 0.76593 0.77538 0.78899 1.16887 1.19285 1.19259 0.91782 0.91149 0.91252 0.90548 0.86406 0.92206 0.89929 0.92945 0.95113 0.95692 0.77192 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 9.06 71.98 0.65 -1.33 16 2 C -0.14 -3.39 6.05 -10.79 -0.07 -3.45 16 3 H 0.09 2.45 8.08 -2.39 -0.02 2.43 16 4 C -0.16 -4.14 9.54 30.60 0.29 -3.85 16 5 C -0.15 -4.28 2.11 -52.18 -0.11 -4.39 16 6 C -0.10 -2.53 9.12 71.98 0.66 -1.87 16 7 C 0.17 7.17 5.58 86.38 0.48 7.65 16 8 N -0.75 -35.42 5.51 -467.41 -2.57 -38.00 16 9 C 0.53 32.35 7.75 86.36 0.67 33.02 16 10 O -0.64 -44.59 15.01 -4.33 -0.06 -44.65 16 11 C -0.57 -33.41 9.54 24.83 0.24 -33.17 16 12 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 13 C 0.03 1.51 5.50 85.31 0.47 1.98 16 14 N -0.82 -51.82 11.83 21.84 0.26 -51.56 16 15 Si 1.00 41.63 29.56 68.60 2.03 43.66 16 16 H -0.25 -9.40 7.11 99.48 0.71 -8.70 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 19 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 21 H 0.07 1.04 7.28 -2.39 -0.02 1.02 16 22 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.12 2.42 8.05 -2.39 -0.02 2.40 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 1.53 6.96 -2.39 -0.02 1.51 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.03 1.37 8.13 -2.38 -0.02 1.35 16 28 H 0.02 1.15 7.93 -2.39 -0.02 1.13 16 29 H 0.39 16.26 8.46 -92.71 -0.78 15.47 16 30 H 0.27 15.52 8.29 -92.70 -0.77 14.75 16 Total: -1.00 -76.14 259.22 3.27 -72.88 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.34 Total: 23.09 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 3.28 Total: -5.42 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.32 Total: -89.56 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.06 Total: -44.65 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -76.14 3.27 -72.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021892.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.644 kcal (2) G-P(sol) polarization free energy of solvation -76.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds