Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 115.56132 * 2 1 4 4 C 1.52998 * 117.49692 * 145.68998 * 2 1 3 5 5 C 1.53001 * 60.00198 * 107.48781 * 4 2 1 6 6 C 1.52994 * 117.49773 * 107.51154 * 5 4 2 7 7 C 1.52995 * 117.49781 * 252.51216 * 5 4 2 8 8 N 1.46504 * 109.47153 * 294.70387 * 7 5 4 9 9 C 1.34776 * 120.00183 * 177.55005 * 8 7 5 10 10 O 1.21689 * 120.00120 * 359.97438 * 9 8 7 11 11 C 1.46375 * 119.99789 * 180.02562 * 9 8 7 12 12 H 1.07994 * 120.00167 * 359.97438 * 11 9 8 13 13 C 1.40055 * 119.99865 * 179.97438 * 11 9 8 14 14 N 1.30675 * 119.99791 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00211 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47074 * 59.99951 * 15 13 11 17 17 H 1.48495 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47019 * 300.00193 * 15 13 11 19 19 H 1.08995 * 109.47175 * 205.68645 * 1 2 3 20 20 H 1.08998 * 109.47364 * 325.68828 * 1 2 3 21 21 H 1.09000 * 109.46820 * 85.68957 * 1 2 3 22 22 H 1.09003 * 117.49661 * 359.97438 * 4 2 1 23 23 H 1.08998 * 117.51872 * 214.96857 * 4 2 1 24 24 H 1.09005 * 109.46964 * 210.74594 * 6 5 4 25 25 H 1.09003 * 109.47432 * 330.74375 * 6 5 4 26 26 H 1.08998 * 109.47722 * 90.74425 * 6 5 4 27 27 H 1.08998 * 109.47877 * 54.70713 * 7 5 4 28 28 H 1.08998 * 109.47028 * 174.70747 * 7 5 4 29 29 H 0.97002 * 119.99738 * 357.54253 * 8 7 5 30 30 H 0.97002 * 119.99932 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1210 0.7650 5 6 2.2364 -1.1210 -0.7650 6 6 3.5491 -0.7766 -1.4714 7 6 1.3588 -2.1562 -1.4714 8 7 1.8633 -3.5014 -1.1848 9 6 1.2145 -4.5809 -1.6645 10 8 0.2092 -4.4383 -2.3352 11 6 1.7183 -5.9249 -1.3776 12 1 2.6102 -6.0515 -0.7819 13 6 1.0438 -7.0467 -1.8756 14 7 -0.0351 -6.8935 -2.5967 15 14 1.6871 -8.7619 -1.5101 16 1 1.7096 -8.9796 -0.0413 17 1 0.8009 -9.7690 -2.1468 18 1 3.0627 -8.9005 -2.0522 19 1 -0.3633 -0.9261 0.4454 20 1 -0.3634 0.8488 0.5793 21 1 -0.3633 0.0772 -1.0248 22 1 1.6111 -1.8582 1.2686 23 1 3.1716 -0.8756 1.2683 24 1 3.3330 -0.2901 -2.4227 25 1 4.1338 -0.1039 -0.8439 26 1 4.1158 -1.6902 -1.6510 27 1 0.3333 -2.0687 -1.1126 28 1 1.3836 -1.9803 -2.5468 29 1 2.6645 -3.6151 -0.6499 30 1 -0.5026 -7.6705 -2.9413 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704021897.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = -56.448182 kcal Electronic energy + Delta-G solvation = -12471.807774 eV Core-core repulsion = 10266.177507 eV Total energy + Delta-G solvation = -2205.630267 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.19971 -38.71450 -34.88927 -34.15526 -30.98769 -29.11171 -27.95666 -26.64069 -22.21662 -21.53719 -20.15023 -18.76539 -17.43337 -16.50132 -16.13763 -15.96484 -15.25230 -14.77356 -14.35927 -13.95630 -13.90760 -13.32189 -13.09076 -13.01563 -12.98137 -12.68561 -12.63147 -12.28079 -12.06863 -11.82589 -10.92870 -10.78221 -10.56596 -9.84095 -9.44926 -8.29233 -6.86301 1.39439 1.43472 1.55232 2.24245 2.46834 2.66284 3.34395 3.60284 3.71152 3.81108 4.03409 4.10690 4.44750 4.64200 4.76840 4.89039 4.90600 4.95687 4.99243 5.04643 5.12619 5.21345 5.30917 5.39697 5.46253 5.87534 6.24088 6.29125 6.85828 7.56930 8.49238 8.67270 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.057824 B = 0.008120 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.107791 B = 3447.567170 C = 3611.330401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.128 4.128 3 H 0.132 0.868 4 C -0.160 4.160 5 C -0.151 4.151 6 C -0.105 4.105 7 C 0.168 3.832 8 N -0.749 5.749 9 C 0.535 3.465 10 O -0.636 6.636 11 C -0.575 4.575 12 H 0.087 0.913 13 C 0.027 3.973 14 N -0.824 5.824 15 Si 1.000 3.000 16 H -0.254 1.254 17 H -0.274 1.274 18 H -0.254 1.254 19 H 0.037 0.963 20 H 0.083 0.917 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.118 0.882 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.026 0.974 29 H 0.394 0.606 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 9.761 6.593 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 H 0.149 0.851 4 C -0.197 4.197 5 C -0.151 4.151 6 C -0.162 4.162 7 C 0.044 3.956 8 N -0.403 5.403 9 C 0.340 3.660 10 O -0.524 6.524 11 C -0.611 4.611 12 H 0.106 0.894 13 C -0.188 4.188 14 N -0.453 5.453 15 Si 0.819 3.181 16 H -0.178 1.178 17 H -0.198 1.198 18 H -0.177 1.177 19 H 0.056 0.944 20 H 0.101 0.899 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.136 0.864 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.227 0.773 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.236 9.829 6.000 13.096 hybrid contribution 0.125 -0.866 0.014 0.875 sum 6.361 8.963 6.013 12.528 Atomic orbital electron populations 1.21406 0.93513 1.01783 1.01715 1.22546 0.94985 0.94646 1.02436 0.85068 1.23197 1.03195 1.01011 0.92337 1.21726 0.98988 0.99937 0.94443 1.21255 0.93436 1.01374 1.00145 1.20400 0.95929 0.82168 0.97103 1.45765 1.31534 1.04562 1.58408 1.18655 0.82842 0.85615 0.78935 1.90542 1.29409 1.87388 1.45075 1.21414 1.13608 0.89950 1.36154 0.89447 1.27027 0.93666 1.05969 0.92160 1.70196 1.15782 1.32903 1.26424 0.85042 0.78983 0.74331 0.79734 1.17766 1.19838 1.17748 0.94394 0.89859 0.92942 0.90425 0.86383 0.92336 0.89964 0.93028 0.94650 0.95551 0.77294 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.71 71.98 0.63 -2.60 16 2 C -0.13 -3.03 6.13 -10.79 -0.07 -3.10 16 3 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.16 -4.05 9.54 30.59 0.29 -3.76 16 5 C -0.15 -4.39 2.11 -52.18 -0.11 -4.50 16 6 C -0.11 -2.56 9.72 71.98 0.70 -1.86 16 7 C 0.17 7.00 5.38 86.38 0.46 7.46 16 8 N -0.75 -35.46 5.51 -467.41 -2.58 -38.04 16 9 C 0.54 32.39 7.75 86.36 0.67 33.06 16 10 O -0.64 -44.47 15.02 -4.31 -0.06 -44.53 16 11 C -0.57 -33.54 9.54 24.83 0.24 -33.30 16 12 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 13 C 0.03 1.52 5.50 85.31 0.47 1.99 16 14 N -0.82 -51.74 11.83 21.84 0.26 -51.48 16 15 Si 1.00 41.66 29.56 68.60 2.03 43.68 16 16 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 19 H 0.04 1.12 7.33 -2.39 -0.02 1.10 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.05 1.42 8.09 -2.39 -0.02 1.40 16 22 H 0.08 2.27 8.05 -2.39 -0.02 2.26 16 23 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.59 6.07 -2.39 -0.01 1.58 16 28 H 0.03 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.39 16.26 8.45 -92.71 -0.78 15.48 16 30 H 0.27 15.60 8.29 -92.71 -0.77 14.83 16 Total: -1.00 -76.02 258.68 3.27 -72.75 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.34 Total: 24.22 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 3.28 Total: -6.61 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -2.32 Total: -89.52 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -0.06 Total: -44.53 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.68 kcal Total: -76.02 3.27 -72.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021897.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.304 kcal (2) G-P(sol) polarization free energy of solvation -76.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds