Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 115.55023 * 2 1 4 4 C 1.53002 * 117.49908 * 145.70362 * 2 1 3 5 5 C 1.52995 * 117.50095 * 214.32775 * 2 1 3 6 6 C 1.53005 * 117.49615 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.50111 * 145.02061 * 5 2 1 8 8 N 1.46504 * 109.47094 * 294.72279 * 7 5 2 9 9 C 1.34774 * 120.00357 * 174.61956 * 8 7 5 10 10 O 1.21695 * 119.99394 * 359.97438 * 9 8 7 11 11 C 1.46369 * 120.00291 * 180.02562 * 9 8 7 12 12 H 1.07997 * 119.99689 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99883 * 179.72004 * 11 9 8 14 14 N 1.30675 * 120.00474 * 0.28156 * 13 11 9 15 15 Si 1.86807 * 119.99900 * 180.27405 * 13 11 9 16 16 H 1.48496 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46813 * 120.00286 * 15 13 11 18 18 H 1.48496 * 109.47021 * 240.00308 * 15 13 11 19 19 H 1.08996 * 109.46971 * 205.67616 * 1 2 3 20 20 H 1.08998 * 109.47052 * 325.66806 * 1 2 3 21 21 H 1.08997 * 109.46907 * 85.67276 * 1 2 3 22 22 H 1.08999 * 117.49823 * 0.02562 * 4 2 1 23 23 H 1.09006 * 117.49928 * 214.97518 * 4 2 1 24 24 H 1.09003 * 109.46881 * 199.96396 * 6 5 2 25 25 H 1.08995 * 109.47280 * 319.96566 * 6 5 2 26 26 H 1.08996 * 109.47122 * 79.96942 * 6 5 2 27 27 H 1.09007 * 109.46863 * 174.72727 * 7 5 2 28 28 H 1.08993 * 109.47014 * 54.72485 * 7 5 2 29 29 H 0.97007 * 119.99553 * 354.62252 * 8 7 5 30 30 H 0.96993 * 120.00141 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 0.7647 5 6 2.2365 -1.1207 -0.7653 6 6 1.3588 -2.1554 -1.4726 7 6 3.5490 -0.7755 -1.4716 8 7 3.2872 0.1851 -2.5464 9 6 4.3134 0.7184 -3.2384 10 8 5.4576 0.4023 -2.9702 11 6 4.0519 1.6785 -4.3118 12 1 3.0365 1.9592 -4.5496 13 6 5.1186 2.2370 -5.0270 14 7 6.3472 1.8969 -4.7397 15 14 4.7852 3.4681 -6.3918 16 1 3.3213 3.6828 -6.5181 17 1 5.4480 4.7570 -6.0685 18 1 5.3214 2.9436 -7.6734 19 1 -0.3633 -0.9262 0.4453 20 1 -0.3633 0.8486 0.5796 21 1 -0.3633 0.0775 -1.0247 22 1 1.6112 -1.8590 1.2675 23 1 3.1716 -0.8755 1.2680 24 1 1.9415 -3.0567 -1.6631 25 1 0.5056 -2.4011 -0.8403 26 1 1.0042 -1.7454 -2.4182 27 1 3.9844 -1.6818 -1.8925 28 1 4.2434 -0.3379 -0.7544 29 1 2.3752 0.4373 -2.7599 30 1 7.0860 2.2840 -5.2348 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704021900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = -33.146020 kcal Electronic energy + Delta-G solvation = -12439.542491 eV Core-core repulsion = 10234.922682 eV Total energy + Delta-G solvation = -2204.619809 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.76310 -36.74178 -32.89360 -32.06027 -29.39979 -27.76753 -26.76831 -24.54976 -20.99964 -19.64290 -18.44953 -17.08000 -15.39264 -15.15017 -14.43372 -14.00194 -13.73663 -13.23149 -12.97980 -12.64673 -12.24675 -12.02117 -11.84756 -11.41644 -11.29167 -11.08704 -10.93979 -10.58449 -10.39180 -10.17046 -9.66400 -9.33807 -8.82078 -7.54979 -7.39933 -6.14253 -4.59255 3.15227 3.23135 3.27808 3.85903 4.15835 4.63688 4.84183 4.89028 4.98088 5.30044 5.40115 5.46711 5.76872 5.84980 5.86183 5.89505 6.01305 6.02939 6.18075 6.25245 6.33552 6.48183 6.61045 6.70112 7.47568 8.00765 8.18572 8.39687 9.06960 9.62315 10.65225 10.84579 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054957 B = 0.008156 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.368402 B = 3432.350234 C = 3672.485037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.146 4.146 3 H 0.105 0.895 4 C -0.169 4.169 5 C -0.133 4.133 6 C -0.110 4.110 7 C 0.170 3.830 8 N -0.763 5.763 9 C 0.554 3.446 10 O -0.584 6.584 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.276 1.276 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.380 0.620 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 -3.570 6.280 12.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.165 4.165 3 H 0.124 0.876 4 C -0.207 4.207 5 C -0.134 4.134 6 C -0.167 4.167 7 C 0.045 3.955 8 N -0.418 5.418 9 C 0.358 3.642 10 O -0.467 6.467 11 C -0.582 4.582 12 H 0.085 0.915 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.731 3.269 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.211 0.789 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.548 -3.798 6.443 12.128 hybrid contribution -0.524 0.726 -0.722 1.150 sum -10.072 -3.073 5.721 11.984 Atomic orbital electron populations 1.21327 0.93207 1.01216 1.01758 1.22378 0.94824 0.94910 1.04361 0.87646 1.23178 1.02481 1.01467 0.93526 1.21869 0.98573 0.99942 0.93006 1.21270 0.98061 0.97386 0.99994 1.20357 0.92060 0.93086 0.90030 1.46074 1.09611 1.48233 1.37894 1.18230 0.83219 0.81009 0.81778 1.90595 1.21420 1.64575 1.70076 1.20923 0.93747 1.25931 1.17629 0.91457 1.25713 0.94548 0.95971 0.97006 1.70037 0.99003 1.35743 1.35057 0.86336 0.79324 0.80362 0.80838 1.18799 1.20203 1.20185 0.92909 0.92560 0.92145 0.89100 0.88913 0.92354 0.92861 0.92031 0.93412 0.93177 0.78865 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.06 37.16 0.34 -0.99 16 2 C -0.15 -2.03 6.09 -90.62 -0.55 -2.58 16 3 H 0.11 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.17 -2.22 9.51 -26.73 -0.25 -2.47 16 5 C -0.13 -2.02 2.11 -154.51 -0.33 -2.35 16 6 C -0.11 -1.45 9.12 37.16 0.34 -1.11 16 7 C 0.17 3.42 5.58 -4.04 -0.02 3.40 16 8 N -0.76 -17.64 5.51 -61.72 -0.34 -17.98 16 9 C 0.55 16.22 7.75 -12.99 -0.10 16.12 16 10 O -0.58 -19.47 15.01 5.19 0.08 -19.39 16 11 C -0.55 -15.75 9.54 -35.64 -0.34 -16.09 16 12 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 13 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 14 N -0.77 -23.57 11.83 55.55 0.66 -22.92 16 15 Si 0.91 20.47 29.56 -169.99 -5.02 15.44 16 16 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H 0.05 0.53 7.28 -51.93 -0.38 0.15 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.09 1.02 8.05 -51.93 -0.42 0.61 16 23 H 0.09 1.24 8.08 -51.93 -0.42 0.82 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.59 6.96 -51.93 -0.36 0.23 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 1.01 8.13 -51.92 -0.42 0.59 16 28 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 29 H 0.38 7.86 8.46 -40.82 -0.35 7.51 16 30 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -33.87 259.22 -6.15 -40.03 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.42 Total: 4.61 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -1.02 Total: -3.69 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.32 Total: -40.90 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: 0.08 Total: -19.39 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.87 -6.15 -40.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.880 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds