Wall clock time and date at job start Mon Mar 30 2020 02:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 115.55023 * 2 1 4 4 C 1.53002 * 117.49908 * 145.70362 * 2 1 3 5 5 C 1.52995 * 117.50095 * 214.32775 * 2 1 3 6 6 C 1.53005 * 117.49615 * 0.02562 * 5 2 1 7 7 C 1.53002 * 117.50111 * 145.02061 * 5 2 1 8 8 N 1.46504 * 109.47094 * 294.72279 * 7 5 2 9 9 C 1.34774 * 120.00357 * 174.61956 * 8 7 5 10 10 O 1.21695 * 119.99394 * 359.97438 * 9 8 7 11 11 C 1.46369 * 120.00291 * 180.02562 * 9 8 7 12 12 H 1.07997 * 119.99689 * 359.97438 * 11 9 8 13 13 C 1.40045 * 119.99883 * 179.72004 * 11 9 8 14 14 N 1.30675 * 120.00474 * 0.28156 * 13 11 9 15 15 Si 1.86807 * 119.99900 * 180.27405 * 13 11 9 16 16 H 1.48496 * 109.47142 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46813 * 120.00286 * 15 13 11 18 18 H 1.48496 * 109.47021 * 240.00308 * 15 13 11 19 19 H 1.08996 * 109.46971 * 205.67616 * 1 2 3 20 20 H 1.08998 * 109.47052 * 325.66806 * 1 2 3 21 21 H 1.08997 * 109.46907 * 85.67276 * 1 2 3 22 22 H 1.08999 * 117.49823 * 0.02562 * 4 2 1 23 23 H 1.09006 * 117.49928 * 214.97518 * 4 2 1 24 24 H 1.09003 * 109.46881 * 199.96396 * 6 5 2 25 25 H 1.08995 * 109.47280 * 319.96566 * 6 5 2 26 26 H 1.08996 * 109.47122 * 79.96942 * 6 5 2 27 27 H 1.09007 * 109.46863 * 174.72727 * 7 5 2 28 28 H 1.08993 * 109.47014 * 54.72485 * 7 5 2 29 29 H 0.97007 * 119.99553 * 354.62252 * 8 7 5 30 30 H 0.96993 * 120.00141 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1212 0.7647 5 6 2.2365 -1.1207 -0.7653 6 6 1.3588 -2.1554 -1.4726 7 6 3.5490 -0.7755 -1.4716 8 7 3.2872 0.1851 -2.5464 9 6 4.3134 0.7184 -3.2384 10 8 5.4576 0.4023 -2.9702 11 6 4.0519 1.6785 -4.3118 12 1 3.0365 1.9592 -4.5496 13 6 5.1186 2.2370 -5.0270 14 7 6.3472 1.8969 -4.7397 15 14 4.7852 3.4681 -6.3918 16 1 3.3213 3.6828 -6.5181 17 1 5.4480 4.7570 -6.0685 18 1 5.3214 2.9436 -7.6734 19 1 -0.3633 -0.9262 0.4453 20 1 -0.3633 0.8486 0.5796 21 1 -0.3633 0.0775 -1.0247 22 1 1.6112 -1.8590 1.2675 23 1 3.1716 -0.8755 1.2680 24 1 1.9415 -3.0567 -1.6631 25 1 0.5056 -2.4011 -0.8403 26 1 1.0042 -1.7454 -2.4182 27 1 3.9844 -1.6818 -1.8925 28 1 4.2434 -0.3379 -0.7544 29 1 2.3752 0.4373 -2.7599 30 1 7.0860 2.2840 -5.2348 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704021900.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:26 Heat of formation + Delta-G solvation = -57.150148 kcal Electronic energy + Delta-G solvation = -12440.583388 eV Core-core repulsion = 10234.922682 eV Total energy + Delta-G solvation = -2205.660707 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17128 -38.75044 -34.93181 -34.20790 -30.65226 -28.92268 -28.60828 -26.33180 -22.14285 -21.73551 -19.89664 -18.94189 -17.47276 -16.70517 -15.96099 -15.88380 -15.34680 -14.60960 -14.36541 -14.17136 -13.76692 -13.31207 -13.09483 -12.97329 -12.84235 -12.74425 -12.64722 -12.32283 -11.99151 -11.84003 -10.96319 -10.82440 -10.50800 -9.85122 -9.47123 -8.30183 -6.86973 1.39482 1.39937 1.58225 2.23800 2.45945 2.66758 3.31979 3.58953 3.70267 3.82780 4.05081 4.10469 4.46850 4.64392 4.78258 4.90208 4.91340 4.96569 5.02254 5.06475 5.15308 5.27072 5.30952 5.38553 5.52265 5.86971 6.23062 6.27967 6.85440 7.55842 8.48344 8.66656 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054957 B = 0.008156 C = 0.007622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.368402 B = 3432.350234 C = 3672.485037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.144 4.144 3 H 0.082 0.918 4 C -0.152 4.152 5 C -0.147 4.147 6 C -0.104 4.104 7 C 0.171 3.829 8 N -0.748 5.748 9 C 0.535 3.465 10 O -0.637 6.637 11 C -0.573 4.573 12 H 0.088 0.912 13 C 0.026 3.974 14 N -0.824 5.824 15 Si 1.001 2.999 16 H -0.246 1.246 17 H -0.268 1.268 18 H -0.267 1.267 19 H 0.072 0.928 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.122 0.878 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.025 0.975 29 H 0.394 0.606 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -3.157 6.062 14.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.163 4.163 3 H 0.100 0.900 4 C -0.190 4.190 5 C -0.147 4.147 6 C -0.161 4.161 7 C 0.046 3.954 8 N -0.402 5.402 9 C 0.339 3.661 10 O -0.525 6.525 11 C -0.609 4.609 12 H 0.106 0.894 13 C -0.189 4.189 14 N -0.454 5.454 15 Si 0.820 3.180 16 H -0.169 1.169 17 H -0.193 1.193 18 H -0.192 1.192 19 H 0.091 0.909 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.140 0.860 23 H 0.103 0.897 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.227 0.773 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.091 -3.404 6.253 14.031 hybrid contribution 0.270 0.562 -0.582 0.853 sum -11.820 -2.842 5.671 13.415 Atomic orbital electron populations 1.21334 0.90605 1.02790 1.02278 1.22432 0.96701 0.93583 1.03571 0.89994 1.23285 1.02531 1.01445 0.91691 1.21713 0.96703 1.01999 0.94292 1.21251 0.98469 0.96358 1.00043 1.20388 0.94889 0.91247 0.88840 1.45750 1.09093 1.47734 1.37587 1.18684 0.83465 0.81433 0.82520 1.90545 1.23734 1.66446 1.71742 1.21460 0.95163 1.26293 1.17998 0.89431 1.27034 0.93798 0.98078 0.99953 1.70205 1.00643 1.37551 1.36966 0.84934 0.80128 0.76716 0.76255 1.16877 1.19294 1.19231 0.90946 0.91494 0.92064 0.85994 0.89692 0.92587 0.89864 0.92671 0.95057 0.95653 0.77253 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.06 71.98 0.65 -1.52 16 2 C -0.14 -3.76 6.09 -10.80 -0.07 -3.82 16 3 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 4 C -0.15 -3.68 9.51 30.60 0.29 -3.39 16 5 C -0.15 -4.30 2.11 -52.18 -0.11 -4.41 16 6 C -0.10 -2.52 9.12 71.98 0.66 -1.86 16 7 C 0.17 7.14 5.58 86.38 0.48 7.62 16 8 N -0.75 -35.45 5.51 -467.40 -2.57 -38.02 16 9 C 0.53 32.38 7.75 86.36 0.67 33.05 16 10 O -0.64 -44.59 15.01 -4.33 -0.07 -44.65 16 11 C -0.57 -33.41 9.54 24.83 0.24 -33.18 16 12 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 13 C 0.03 1.49 5.50 85.30 0.47 1.96 16 14 N -0.82 -51.79 11.83 21.83 0.26 -51.53 16 15 Si 1.00 41.67 29.56 68.60 2.03 43.69 16 16 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 17 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 18 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 19 H 0.07 1.13 7.28 -2.39 -0.02 1.11 16 20 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.12 2.24 8.05 -2.39 -0.02 2.22 16 23 H 0.08 2.19 8.08 -2.38 -0.02 2.17 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.08 1.52 6.96 -2.39 -0.02 1.51 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.03 1.39 8.13 -2.38 -0.02 1.37 16 28 H 0.03 1.16 7.93 -2.39 -0.02 1.14 16 29 H 0.39 16.32 8.46 -92.70 -0.78 15.53 16 30 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -76.13 259.22 3.26 -72.87 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.34 Total: 23.19 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 3.28 Total: -5.55 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.32 Total: -89.55 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.07 Total: -44.65 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -76.13 3.26 -72.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021900.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.721 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds