Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.54881 * 2 1 4 4 C 1.52999 * 117.49961 * 214.29932 * 2 1 3 5 5 C 1.52995 * 59.99952 * 252.50742 * 4 2 1 6 6 C 1.53000 * 117.49948 * 252.51163 * 5 4 2 7 7 C 1.53000 * 117.52130 * 107.47963 * 5 4 2 8 8 N 1.46496 * 109.47511 * 210.87012 * 7 5 4 9 9 C 1.34777 * 120.00289 * 184.97359 * 8 7 5 10 10 O 1.21680 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.46375 * 119.99906 * 179.97438 * 9 8 7 12 12 H 1.07997 * 120.00134 * 0.02562 * 11 9 8 13 13 C 1.40054 * 119.99744 * 180.02562 * 11 9 8 14 14 N 1.30663 * 119.99840 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99653 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47296 * 60.00054 * 15 13 11 17 17 H 1.48500 * 109.46928 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47271 * 299.99966 * 15 13 11 19 19 H 1.09000 * 109.46860 * 274.32125 * 1 2 3 20 20 H 1.08996 * 109.47343 * 34.32483 * 1 2 3 21 21 H 1.08996 * 109.46931 * 154.32714 * 1 2 3 22 22 H 1.09005 * 117.50143 * 145.01723 * 4 2 1 23 23 H 1.09004 * 117.50073 * 359.97438 * 4 2 1 24 24 H 1.09001 * 109.47515 * 123.70806 * 6 5 4 25 25 H 1.09004 * 109.47126 * 3.70915 * 6 5 4 26 26 H 1.09007 * 109.46950 * 243.71508 * 6 5 4 27 27 H 1.09000 * 109.47038 * 330.87109 * 7 5 4 28 28 H 1.09001 * 109.47212 * 90.86745 * 7 5 4 29 29 H 0.97004 * 119.99670 * 4.97389 * 8 7 5 30 30 H 0.97005 * 119.99876 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2365 -1.1208 0.7652 6 6 3.5490 -0.7755 1.4715 7 6 1.3589 -2.1555 1.4724 8 7 0.8926 -1.6094 2.7493 9 6 0.1833 -2.3834 3.5945 10 8 -0.0693 -3.5359 3.2972 11 6 -0.2821 -1.8378 4.8706 12 1 -0.0574 -0.8150 5.1347 13 6 -1.0186 -2.6423 5.7491 14 7 -1.2899 -3.8799 5.4297 15 14 -1.6132 -1.9459 7.3772 16 1 -2.5026 -0.7841 7.1234 17 1 -2.3632 -2.9915 8.1185 18 1 -0.4459 -1.5087 8.1844 19 1 -0.3633 0.0774 1.0248 20 1 -0.3634 0.8487 -0.5795 21 1 -0.3633 -0.9262 -0.4452 22 1 3.1716 -0.8754 -1.2682 23 1 1.6112 -1.8590 -1.2676 24 1 3.3887 0.0665 2.1450 25 1 4.3018 -0.5089 0.7295 26 1 3.8918 -1.6380 2.0432 27 1 0.5007 -2.3942 0.8443 28 1 1.9389 -3.0603 1.6543 29 1 1.0944 -0.6907 2.9865 30 1 -1.7998 -4.4373 6.0384 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704021903.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -32.281219 kcal Electronic energy + Delta-G solvation = -12545.940390 eV Core-core repulsion = 10341.358081 eV Total energy + Delta-G solvation = -2204.582309 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.78100 -36.69837 -32.82795 -32.00667 -29.83185 -27.07870 -26.71214 -24.79947 -20.98575 -19.66376 -18.52705 -16.89123 -15.27208 -15.23405 -14.52528 -13.99805 -13.72712 -13.20380 -12.69996 -12.49451 -12.19932 -12.08160 -11.87222 -11.34126 -11.25551 -11.10458 -10.89604 -10.55241 -10.37190 -10.22482 -9.69465 -9.27240 -8.80161 -7.54924 -7.38391 -6.13585 -4.58807 3.18302 3.22910 3.24902 3.85457 4.15993 4.64224 4.82161 4.90352 5.04924 5.34110 5.38023 5.53111 5.81771 5.88918 5.92746 6.01522 6.06031 6.07454 6.28434 6.31618 6.35290 6.55721 6.64262 6.72552 7.47637 8.00948 8.19057 8.39726 9.07182 9.62973 10.65856 10.85302 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055683 B = 0.008337 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.729043 B = 3357.721334 C = 3399.061238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.145 4.145 3 H 0.099 0.901 4 C -0.170 4.170 5 C -0.134 4.134 6 C -0.110 4.110 7 C 0.172 3.828 8 N -0.761 5.761 9 C 0.555 3.445 10 O -0.583 6.583 11 C -0.546 4.546 12 H 0.066 0.934 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 H 0.069 0.931 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.380 0.620 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 7.820 -7.172 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.163 4.163 3 H 0.117 0.883 4 C -0.207 4.207 5 C -0.135 4.135 6 C -0.167 4.167 7 C 0.047 3.953 8 N -0.416 5.416 9 C 0.359 3.641 10 O -0.467 6.467 11 C -0.583 4.583 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.398 5.398 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 H 0.087 0.913 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.211 0.789 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.164 6.758 -7.345 11.238 hybrid contribution -0.138 0.797 0.852 1.175 sum 5.026 7.555 -6.493 11.158 Atomic orbital electron populations 1.21356 0.92667 1.01217 1.02692 1.22386 0.95504 0.93896 1.04495 0.88330 1.23214 1.02270 1.01712 0.93521 1.21892 0.98184 1.00380 0.92999 1.21277 0.94032 1.01812 0.99604 1.20345 0.94987 0.93666 0.86352 1.46037 1.61160 1.15479 1.18949 1.18196 0.77184 0.84941 0.83815 1.90592 1.60426 1.18408 1.77228 1.20853 1.36572 0.99068 1.01827 0.91577 1.25702 0.94334 0.94268 0.98892 1.70015 1.29019 1.06222 1.34575 0.86456 0.79260 0.79173 0.81955 1.19332 1.20597 1.19337 0.91255 0.92935 0.92611 0.89142 0.88891 0.92290 0.93065 0.91881 0.93642 0.93005 0.78912 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.05 37.16 0.34 -1.40 16 2 C -0.14 -1.95 6.13 -90.62 -0.56 -2.51 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.17 -2.19 9.51 -26.73 -0.25 -2.44 16 5 C -0.13 -2.03 2.13 -154.51 -0.33 -2.36 16 6 C -0.11 -1.50 9.79 37.16 0.36 -1.14 16 7 C 0.17 3.43 4.86 -4.04 -0.02 3.41 16 8 N -0.76 -17.35 5.33 -61.73 -0.33 -17.68 16 9 C 0.55 16.09 7.75 -12.99 -0.10 15.99 16 10 O -0.58 -19.33 15.02 5.21 0.08 -19.25 16 11 C -0.55 -15.67 9.54 -35.63 -0.34 -16.01 16 12 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 13 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 14 N -0.77 -23.48 11.83 55.55 0.66 -22.82 16 15 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H 0.07 1.12 8.01 -51.93 -0.42 0.71 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.83 7.27 -51.93 -0.38 0.45 16 22 H 0.09 1.00 8.03 -51.93 -0.42 0.59 16 23 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.59 7.88 -51.93 -0.41 0.18 16 26 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 27 H 0.05 0.96 6.94 -51.93 -0.36 0.60 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.38 7.76 8.45 -40.82 -0.34 7.41 16 30 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 258.68 15.07 3.90 3.90 Total: -1.00 -33.47 258.68 -6.11 -39.58 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.40 Total: 4.95 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.99 Total: -4.07 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.33 Total: -40.51 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.08 Total: -19.25 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.47 -6.11 -39.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021903.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.300 kcal (2) G-P(sol) polarization free energy of solvation -33.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds