Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.54881 * 2 1 4 4 C 1.52999 * 117.49961 * 214.29932 * 2 1 3 5 5 C 1.52995 * 59.99952 * 252.50742 * 4 2 1 6 6 C 1.53000 * 117.49948 * 252.51163 * 5 4 2 7 7 C 1.53000 * 117.52130 * 107.47963 * 5 4 2 8 8 N 1.46496 * 109.47511 * 210.87012 * 7 5 4 9 9 C 1.34777 * 120.00289 * 184.97359 * 8 7 5 10 10 O 1.21680 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.46375 * 119.99906 * 179.97438 * 9 8 7 12 12 H 1.07997 * 120.00134 * 0.02562 * 11 9 8 13 13 C 1.40054 * 119.99744 * 180.02562 * 11 9 8 14 14 N 1.30663 * 119.99840 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99653 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47296 * 60.00054 * 15 13 11 17 17 H 1.48500 * 109.46928 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47271 * 299.99966 * 15 13 11 19 19 H 1.09000 * 109.46860 * 274.32125 * 1 2 3 20 20 H 1.08996 * 109.47343 * 34.32483 * 1 2 3 21 21 H 1.08996 * 109.46931 * 154.32714 * 1 2 3 22 22 H 1.09005 * 117.50143 * 145.01723 * 4 2 1 23 23 H 1.09004 * 117.50073 * 359.97438 * 4 2 1 24 24 H 1.09001 * 109.47515 * 123.70806 * 6 5 4 25 25 H 1.09004 * 109.47126 * 3.70915 * 6 5 4 26 26 H 1.09007 * 109.46950 * 243.71508 * 6 5 4 27 27 H 1.09000 * 109.47038 * 330.87109 * 7 5 4 28 28 H 1.09001 * 109.47212 * 90.86745 * 7 5 4 29 29 H 0.97004 * 119.99670 * 4.97389 * 8 7 5 30 30 H 0.97005 * 119.99876 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1211 -0.7648 5 6 2.2365 -1.1208 0.7652 6 6 3.5490 -0.7755 1.4715 7 6 1.3589 -2.1555 1.4724 8 7 0.8926 -1.6094 2.7493 9 6 0.1833 -2.3834 3.5945 10 8 -0.0693 -3.5359 3.2972 11 6 -0.2821 -1.8378 4.8706 12 1 -0.0574 -0.8150 5.1347 13 6 -1.0186 -2.6423 5.7491 14 7 -1.2899 -3.8799 5.4297 15 14 -1.6132 -1.9459 7.3772 16 1 -2.5026 -0.7841 7.1234 17 1 -2.3632 -2.9915 8.1185 18 1 -0.4459 -1.5087 8.1844 19 1 -0.3633 0.0774 1.0248 20 1 -0.3634 0.8487 -0.5795 21 1 -0.3633 -0.9262 -0.4452 22 1 3.1716 -0.8754 -1.2682 23 1 1.6112 -1.8590 -1.2676 24 1 3.3887 0.0665 2.1450 25 1 4.3018 -0.5089 0.7295 26 1 3.8918 -1.6380 2.0432 27 1 0.5007 -2.3942 0.8443 28 1 1.9389 -3.0603 1.6543 29 1 1.0944 -0.6907 2.9865 30 1 -1.7998 -4.4373 6.0384 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704021903.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -55.910258 kcal Electronic energy + Delta-G solvation = -12546.965022 eV Core-core repulsion = 10341.358081 eV Total energy + Delta-G solvation = -2205.606941 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.19662 -38.69690 -34.87748 -34.13285 -31.03152 -29.06976 -27.84213 -26.66655 -22.13329 -21.69866 -20.06771 -18.77285 -17.41683 -16.46958 -16.15357 -15.94538 -15.32281 -14.68693 -14.22274 -14.14441 -13.73896 -13.24033 -13.17098 -13.03037 -12.96961 -12.68122 -12.62295 -12.28230 -12.06362 -11.84942 -10.92365 -10.86269 -10.45094 -9.84009 -9.42729 -8.28446 -6.85126 1.39703 1.43666 1.55295 2.24614 2.47844 2.67840 3.31558 3.62259 3.71751 3.85880 4.04742 4.09250 4.46291 4.65842 4.75491 4.88842 4.90552 4.95674 5.00080 5.08125 5.14936 5.23462 5.31731 5.39448 5.49025 5.88675 6.25001 6.30372 6.86856 7.58448 8.50548 8.68388 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055683 B = 0.008337 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.729043 B = 3357.721334 C = 3399.061238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 H 0.126 0.874 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.105 4.105 7 C 0.175 3.825 8 N -0.744 5.744 9 C 0.537 3.463 10 O -0.637 6.637 11 C -0.574 4.574 12 H 0.087 0.913 13 C 0.027 3.973 14 N -0.824 5.824 15 Si 0.999 3.001 16 H -0.254 1.254 17 H -0.274 1.274 18 H -0.254 1.254 19 H 0.043 0.957 20 H 0.078 0.922 21 H 0.040 0.960 22 H 0.121 0.879 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.028 0.972 28 H 0.025 0.975 29 H 0.393 0.607 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.145 10.274 -7.058 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 H 0.144 0.856 4 C -0.188 4.188 5 C -0.153 4.153 6 C -0.162 4.162 7 C 0.051 3.949 8 N -0.398 5.398 9 C 0.341 3.659 10 O -0.525 6.525 11 C -0.610 4.610 12 H 0.105 0.895 13 C -0.188 4.188 14 N -0.453 5.453 15 Si 0.818 3.182 16 H -0.178 1.178 17 H -0.199 1.199 18 H -0.178 1.178 19 H 0.062 0.938 20 H 0.097 0.903 21 H 0.059 0.941 22 H 0.139 0.861 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.227 0.773 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.900 9.265 -7.265 13.169 hybrid contribution -0.348 0.016 0.728 0.807 sum 5.551 9.281 -6.537 12.637 Atomic orbital electron populations 1.21355 0.93679 1.01656 1.01378 1.22491 0.94767 0.94783 1.03173 0.85641 1.23330 1.03289 1.00804 0.91426 1.21732 0.98519 1.00585 0.94488 1.21251 0.93662 1.01110 1.00169 1.20334 0.94849 0.94600 0.85145 1.45682 1.59515 1.15476 1.19123 1.18636 0.77568 0.84731 0.85002 1.90543 1.62676 1.20730 1.78539 1.21402 1.37116 1.00286 1.02220 0.89467 1.27010 0.93782 0.94309 1.03692 1.70193 1.30001 1.08335 1.36798 0.85058 0.79097 0.78564 0.75473 1.17768 1.19898 1.17770 0.93776 0.90319 0.94055 0.86086 0.89416 0.91875 0.90081 0.93791 0.95362 0.95660 0.77311 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.37 9.05 71.98 0.65 -2.72 16 2 C -0.13 -3.25 6.13 -10.80 -0.07 -3.32 16 3 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 4 C -0.15 -3.49 9.51 30.59 0.29 -3.20 16 5 C -0.15 -4.43 2.13 -52.18 -0.11 -4.54 16 6 C -0.10 -2.64 9.79 71.98 0.70 -1.93 16 7 C 0.18 7.25 4.86 86.38 0.42 7.67 16 8 N -0.74 -34.79 5.33 -467.42 -2.49 -37.29 16 9 C 0.54 32.22 7.75 86.36 0.67 32.89 16 10 O -0.64 -44.37 15.02 -4.28 -0.06 -44.43 16 11 C -0.57 -33.29 9.54 24.83 0.24 -33.05 16 12 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 13 C 0.03 1.53 5.50 85.31 0.47 2.00 16 14 N -0.82 -51.67 11.83 21.84 0.26 -51.41 16 15 Si 1.00 41.59 29.56 68.60 2.03 43.61 16 16 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 19 H 0.04 1.41 8.01 -2.39 -0.02 1.39 16 20 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.04 1.22 7.27 -2.39 -0.02 1.20 16 22 H 0.12 2.12 8.03 -2.38 -0.02 2.10 16 23 H 0.09 2.14 8.05 -2.38 -0.02 2.12 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 1.56 7.88 -2.38 -0.02 1.54 16 26 H 0.04 1.25 8.04 -2.38 -0.02 1.23 16 27 H 0.03 1.25 6.94 -2.39 -0.02 1.23 16 28 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.39 16.09 8.45 -92.70 -0.78 15.31 16 30 H 0.27 15.57 8.29 -92.70 -0.77 14.80 16 Total: -1.00 -75.54 258.68 3.33 -72.21 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.34 Total: 23.51 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.26 Total: -6.20 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -2.24 Total: -88.70 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.06 Total: -44.43 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -75.54 3.33 -72.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704021903.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.300 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds