Wall clock time and date at job start Mon Mar 30 2020 02:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 115.56765 * 2 1 4 4 C 1.52996 * 117.49850 * 214.30476 * 2 1 3 5 5 C 1.52994 * 60.03453 * 252.52750 * 4 2 1 6 6 C 1.52997 * 117.49800 * 252.47384 * 5 4 2 7 7 C 1.50703 * 117.49939 * 107.47807 * 5 4 2 8 8 O 1.21294 * 120.00014 * 242.29692 * 7 5 4 9 9 N 1.34774 * 119.99825 * 62.29921 * 7 5 4 10 10 C 1.46501 * 120.00289 * 4.11553 * 9 7 5 11 11 C 1.37102 * 120.00091 * 184.11668 * 9 7 5 12 12 H 1.08003 * 119.99735 * 8.59287 * 11 9 7 13 13 C 1.38947 * 120.00179 * 188.59020 * 11 9 7 14 14 N 1.31411 * 120.00098 * 9.52526 * 13 11 9 15 15 Si 1.86805 * 119.99887 * 189.52083 * 13 11 9 16 16 H 1.48498 * 109.46939 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46629 * 120.00195 * 15 13 11 18 18 H 1.48490 * 109.47355 * 240.00092 * 15 13 11 19 19 H 1.08998 * 109.47333 * 154.29683 * 1 2 3 20 20 H 1.09003 * 109.47156 * 274.30319 * 1 2 3 21 21 H 1.09000 * 109.46694 * 34.29971 * 1 2 3 22 22 H 1.08998 * 117.50433 * 145.02002 * 4 2 1 23 23 H 1.09003 * 117.50118 * 0.03025 * 4 2 1 24 24 H 1.09001 * 109.47185 * 50.44807 * 6 5 4 25 25 H 1.09002 * 109.47519 * 170.44667 * 6 5 4 26 26 H 1.09000 * 109.47649 * 290.44850 * 6 5 4 27 27 H 1.08996 * 109.46935 * 354.88512 * 10 9 7 28 28 H 1.09009 * 109.47035 * 114.88567 * 10 9 7 29 29 H 1.08998 * 109.47239 * 234.88472 * 10 9 7 30 30 H 0.96996 * 119.99948 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0005 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2366 -1.1219 0.7651 6 6 3.5495 -0.7782 1.4715 7 6 1.3719 -2.1416 1.4605 8 8 0.4606 -1.7786 2.1740 9 7 1.6111 -3.4569 1.2896 10 6 2.7656 -3.8951 0.5014 11 6 0.7741 -4.3848 1.8534 12 1 -0.1498 -4.0688 2.3149 13 6 1.1143 -5.7318 1.8310 14 7 2.3142 -6.1001 1.4418 15 14 -0.1340 -7.0192 2.3544 16 1 -1.4009 -6.3502 2.7450 17 1 -0.3925 -7.9464 1.2236 18 1 0.3989 -7.7844 3.5100 19 1 -0.3634 -0.9259 -0.4457 20 1 -0.3633 0.0771 1.0248 21 1 -0.3633 0.8490 -0.5791 22 1 3.1715 -0.8754 -1.2682 23 1 1.6112 -1.8583 -1.2685 24 1 3.9526 0.1468 1.0593 25 1 3.3656 -0.6507 2.5383 26 1 4.2657 -1.5858 1.3204 27 1 3.2563 -3.0266 0.0620 28 1 3.4683 -4.4212 1.1477 29 1 2.4313 -4.5636 -0.2920 30 1 2.5518 -7.0404 1.4266 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704353467.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:49 Heat of formation + Delta-G solvation = -5.061672 kcal Electronic energy + Delta-G solvation = -13089.200232 eV Core-core repulsion = 10885.798252 eV Total energy + Delta-G solvation = -2203.401981 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.27850 -36.27761 -34.53074 -31.48119 -29.60800 -26.57459 -26.28241 -24.64547 -21.75811 -20.64590 -17.81574 -16.79905 -15.58506 -14.90795 -14.45525 -14.06906 -13.55052 -12.97932 -12.68349 -12.49280 -11.93796 -11.88586 -11.62101 -11.30194 -11.16759 -10.97243 -10.91025 -10.72403 -10.30074 -10.16282 -9.57693 -9.12696 -9.02907 -8.17597 -7.73639 -6.18070 -3.76706 3.16565 3.26726 3.34188 3.93451 4.08391 4.22293 4.91220 5.10471 5.18803 5.31327 5.56391 5.75101 5.80752 6.05023 6.15194 6.19901 6.29878 6.34030 6.46793 6.50775 6.56643 6.69343 6.92459 7.10885 7.48305 7.63175 8.15016 8.56524 9.25518 9.53281 10.08834 10.75619 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050125 B = 0.011535 C = 0.010477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.474664 B = 2426.834133 C = 2671.769911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.128 4.128 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.133 4.133 6 C -0.104 4.104 7 C 0.476 3.524 8 O -0.590 6.590 9 N -0.443 5.443 10 C 0.109 3.891 11 C -0.300 4.300 12 H 0.102 0.898 13 C 0.026 3.974 14 N -0.887 5.887 15 Si 0.928 3.072 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.282 1.282 19 H 0.052 0.948 20 H 0.075 0.925 21 H 0.046 0.954 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.574 6.116 -4.396 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.146 4.146 3 H 0.118 0.882 4 C -0.205 4.205 5 C -0.136 4.136 6 C -0.162 4.162 7 C 0.264 3.736 8 O -0.476 6.476 9 N -0.161 5.161 10 C -0.035 4.035 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.176 4.176 14 N -0.528 5.528 15 Si 0.755 3.245 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 H 0.071 0.929 20 H 0.094 0.906 21 H 0.065 0.935 22 H 0.110 0.890 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.223 6.057 -4.069 7.628 hybrid contribution -0.303 -0.882 0.102 0.938 sum 1.920 5.175 -3.967 6.798 Atomic orbital electron populations 1.21338 0.92642 1.00640 1.02964 1.22382 0.95795 0.93441 1.03019 0.88168 1.23214 1.02274 1.01576 0.93479 1.21413 0.98411 1.00271 0.93509 1.21226 0.93951 1.00630 1.00382 1.18889 0.86765 0.82296 0.85665 1.90475 1.34629 1.79794 1.42658 1.43650 1.24406 1.03924 1.44119 1.21824 0.89168 0.96406 0.96065 1.19837 1.02163 0.86304 1.34470 0.87973 1.25293 0.96803 0.98185 0.97306 1.70110 1.17908 1.16874 1.47936 0.85829 0.80486 0.80130 0.78082 1.19288 1.20719 1.20773 0.92894 0.90632 0.93456 0.88962 0.88736 0.92700 0.92070 0.91914 0.94823 0.90101 0.93251 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 8.92 37.16 0.33 -1.77 16 2 C -0.13 -2.17 6.06 -90.58 -0.55 -2.72 16 3 H 0.10 1.45 8.12 -51.93 -0.42 1.02 16 4 C -0.17 -2.81 7.83 -26.74 -0.21 -3.02 16 5 C -0.13 -2.59 1.31 -155.62 -0.20 -2.79 16 6 C -0.10 -1.75 9.66 37.16 0.36 -1.39 16 7 C 0.48 12.01 6.28 -10.99 -0.07 11.94 16 8 O -0.59 -16.75 14.85 5.55 0.08 -16.67 16 9 N -0.44 -11.75 3.03 -122.19 -0.37 -12.12 16 10 C 0.11 2.56 8.54 59.85 0.51 3.07 16 11 C -0.30 -8.59 9.52 -14.93 -0.14 -8.73 16 12 H 0.10 3.07 7.23 -52.48 -0.38 2.69 16 13 C 0.03 0.69 5.36 -17.47 -0.09 0.60 16 14 N -0.89 -23.87 9.75 55.50 0.54 -23.33 16 15 Si 0.93 21.20 29.56 -169.99 -5.03 16.18 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H 0.05 1.01 7.90 -51.93 -0.41 0.60 16 20 H 0.07 1.51 7.01 -51.93 -0.36 1.14 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.09 1.69 8.05 -51.93 -0.42 1.27 16 24 H 0.05 0.75 8.00 -51.93 -0.42 0.33 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.02 7.48 -51.93 -0.39 0.63 16 27 H 0.03 0.67 4.33 -51.93 -0.23 0.44 16 28 H 0.08 2.03 6.61 -51.92 -0.34 1.68 16 29 H 0.05 1.20 7.59 -51.93 -0.39 0.81 16 30 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 247.03 15.07 3.72 3.72 Total: -1.00 -30.59 247.03 -5.28 -35.87 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.16 Total: 1.16 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.07 Total: -4.81 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.17 Total: -35.45 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.08 Total: -16.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.59 -5.28 -35.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704353467.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.807 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds