Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 115.56203 * 2 1 4 4 C 1.53070 * 117.49919 * 145.71979 * 2 1 3 5 5 C 1.52996 * 59.98398 * 107.48017 * 4 2 1 6 6 C 1.53003 * 117.49671 * 107.50271 * 5 4 2 7 7 C 1.50702 * 117.50254 * 252.49746 * 5 4 2 8 8 O 1.21296 * 119.99833 * 327.57746 * 7 5 4 9 9 N 1.34780 * 120.00071 * 147.57502 * 7 5 4 10 10 C 1.46495 * 119.99976 * 4.19776 * 9 7 5 11 11 C 1.37095 * 119.99627 * 184.20119 * 9 7 5 12 12 H 1.08001 * 119.99468 * 131.99662 * 11 9 7 13 13 C 1.38946 * 120.00116 * 311.99791 * 11 9 7 14 14 N 1.31412 * 119.99735 * 167.11735 * 13 11 9 15 15 Si 1.86793 * 120.00254 * 347.11705 * 13 11 9 16 16 H 1.48503 * 109.47120 * 94.96675 * 15 13 11 17 17 H 1.48499 * 109.47595 * 214.96482 * 15 13 11 18 18 H 1.48500 * 109.47281 * 334.96890 * 15 13 11 19 19 H 1.09003 * 109.46913 * 205.68447 * 1 2 3 20 20 H 1.09001 * 109.46932 * 325.68306 * 1 2 3 21 21 H 1.08997 * 109.47618 * 85.67951 * 1 2 3 22 22 H 1.08999 * 117.48904 * 359.97438 * 4 2 1 23 23 H 1.08994 * 117.53332 * 214.95262 * 4 2 1 24 24 H 1.09000 * 109.47409 * 207.33372 * 6 5 4 25 25 H 1.09002 * 109.47354 * 87.33565 * 6 5 4 26 26 H 1.09003 * 109.47199 * 327.33601 * 6 5 4 27 27 H 1.09004 * 109.47064 * 84.54151 * 10 9 7 28 28 H 1.08998 * 109.47122 * 204.53641 * 10 9 7 29 29 H 1.09004 * 109.47379 * 324.54622 * 10 9 7 30 30 H 0.97006 * 120.00093 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2368 -1.1219 0.7647 5 6 2.2364 -1.1208 -0.7652 6 6 3.5489 -0.7757 -1.4717 7 6 1.3719 -2.1401 -1.4616 8 8 1.1892 -3.2273 -0.9559 9 7 0.8018 -1.8435 -2.6464 10 6 1.0958 -0.5666 -3.3014 11 6 -0.0531 -2.7369 -3.2383 12 1 -1.0062 -2.4009 -3.6193 13 6 0.3065 -4.0745 -3.3481 14 7 -0.5949 -4.9723 -3.6772 15 14 2.0712 -4.5966 -3.0279 16 1 2.2076 -5.0418 -1.6177 17 1 2.4294 -5.7149 -3.9368 18 1 2.9797 -3.4480 -3.2743 19 1 -0.3633 -0.9262 0.4454 20 1 -0.3633 0.8488 0.5794 21 1 -0.3634 0.0774 -1.0247 22 1 1.6114 -1.8593 1.2679 23 1 3.1721 -0.8771 1.2680 24 1 3.3329 -0.3438 -2.4489 25 1 4.1427 -1.6810 -1.5979 26 1 4.1063 -0.0563 -0.8717 27 1 2.0166 -0.6573 -3.8776 28 1 0.2747 -0.3027 -3.9680 29 1 1.2148 0.2103 -2.5462 30 1 -0.3437 -5.9062 -3.7542 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704353473.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -3.137131 kcal Electronic energy + Delta-G solvation = -13411.858516 eV Core-core repulsion = 11208.539989 eV Total energy + Delta-G solvation = -2203.318526 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.61264 -36.53043 -34.39904 -31.92845 -29.83770 -27.03176 -26.11458 -24.90927 -21.48074 -20.65324 -18.67539 -16.67882 -15.38846 -15.26349 -14.89567 -14.19751 -13.75033 -12.99879 -12.76866 -12.51996 -12.23101 -12.06990 -11.93547 -11.79870 -11.54159 -11.14737 -11.08357 -10.73075 -10.19422 -9.90495 -9.60388 -9.37034 -8.55746 -8.35946 -7.49376 -6.13143 -3.98264 3.33085 3.49981 3.68984 3.80984 4.09177 4.53675 4.62994 4.95931 5.16201 5.25605 5.38244 5.54223 5.59669 5.88582 5.99114 6.00914 6.06675 6.13488 6.21777 6.25645 6.25999 6.39787 6.45548 6.55830 6.70765 7.90589 8.08407 8.83162 8.97167 9.46807 9.88734 10.92048 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041618 B = 0.016052 C = 0.014891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.620696 B = 1743.878175 C = 1879.932047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 H 0.103 0.897 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.114 4.114 7 C 0.493 3.507 8 O -0.545 6.545 9 N -0.466 5.466 10 C 0.078 3.922 11 C -0.348 4.348 12 H 0.093 0.907 13 C 0.086 3.914 14 N -0.875 5.875 15 Si 0.922 3.078 16 H -0.259 1.259 17 H -0.312 1.312 18 H -0.283 1.283 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.101 0.899 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 10.878 4.452 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.154 4.154 3 H 0.121 0.879 4 C -0.187 4.187 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.282 3.718 8 O -0.427 6.427 9 N -0.188 5.188 10 C -0.066 4.066 11 C -0.474 4.474 12 H 0.111 0.889 13 C -0.122 4.122 14 N -0.511 5.511 15 Si 0.754 3.246 16 H -0.185 1.185 17 H -0.242 1.242 18 H -0.208 1.208 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.119 0.881 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.193 10.153 4.635 12.764 hybrid contribution 0.900 -0.291 -0.011 0.946 sum 7.093 9.862 4.624 12.998 Atomic orbital electron populations 1.21393 0.92505 1.01778 1.02528 1.22424 0.95663 0.93550 1.03760 0.87856 1.23097 1.02158 1.00843 0.92580 1.21602 0.98393 1.00550 0.94673 1.21373 0.94068 1.01273 1.00381 1.19406 0.83210 0.87746 0.81451 1.90481 1.63066 1.23414 1.65741 1.43453 1.42203 1.16729 1.16380 1.21855 1.00160 0.87278 0.97258 1.18854 0.99111 0.88761 1.40638 0.88939 1.25410 0.98701 0.95752 0.92325 1.69717 1.34037 1.01994 1.45311 0.86130 0.83249 0.77113 0.78132 1.18457 1.24198 1.20848 0.92119 0.92626 0.91564 0.88104 0.88914 0.91450 0.92306 0.92326 0.94337 0.91746 0.92639 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.17 37.16 0.34 -1.65 16 2 C -0.14 -2.07 5.26 -90.58 -0.48 -2.55 16 3 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.15 -2.46 9.41 -26.70 -0.25 -2.71 16 5 C -0.15 -2.78 1.40 -155.66 -0.22 -3.00 16 6 C -0.11 -1.81 9.43 37.16 0.35 -1.46 16 7 C 0.49 12.10 4.26 -10.98 -0.05 12.06 16 8 O -0.54 -15.75 12.20 5.54 0.07 -15.68 16 9 N -0.47 -11.51 2.49 -122.19 -0.30 -11.81 16 10 C 0.08 1.48 8.68 59.84 0.52 2.00 16 11 C -0.35 -10.11 9.64 -14.94 -0.14 -10.26 16 12 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 13 C 0.09 2.62 5.02 -17.47 -0.09 2.54 16 14 N -0.88 -27.53 13.96 55.50 0.77 -26.75 16 15 Si 0.92 25.61 24.58 -169.99 -4.18 21.43 16 16 H -0.26 -7.57 6.40 56.52 0.36 -7.21 16 17 H -0.31 -8.43 7.11 56.52 0.40 -8.03 16 18 H -0.28 -7.51 7.08 56.52 0.40 -7.11 16 19 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.07 1.13 7.14 -51.93 -0.37 0.76 16 22 H 0.10 1.84 7.93 -51.93 -0.41 1.43 16 23 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.07 1.02 5.70 -51.93 -0.30 0.72 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.74 8.11 -51.93 -0.42 0.31 16 27 H 0.04 0.68 7.23 -51.93 -0.38 0.31 16 28 H 0.06 1.15 8.00 -51.93 -0.42 0.74 16 29 H 0.05 0.89 5.39 -51.93 -0.28 0.61 16 30 H 0.27 8.03 8.31 -40.82 -0.34 7.69 16 LS Contribution 242.40 15.07 3.65 3.65 Total: -1.00 -34.04 242.40 -4.27 -38.31 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -4.27 Total: -4.12 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -0.01 Total: -5.03 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.47 Total: -38.56 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.18 Total: 21.43 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -34.04 -4.27 -38.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704353473.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.171 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds