Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 115.56203 * 2 1 4 4 C 1.53070 * 117.49919 * 145.71979 * 2 1 3 5 5 C 1.52996 * 59.98398 * 107.48017 * 4 2 1 6 6 C 1.53003 * 117.49671 * 107.50271 * 5 4 2 7 7 C 1.50702 * 117.50254 * 252.49746 * 5 4 2 8 8 O 1.21296 * 119.99833 * 327.57746 * 7 5 4 9 9 N 1.34780 * 120.00071 * 147.57502 * 7 5 4 10 10 C 1.46495 * 119.99976 * 4.19776 * 9 7 5 11 11 C 1.37095 * 119.99627 * 184.20119 * 9 7 5 12 12 H 1.08001 * 119.99468 * 131.99662 * 11 9 7 13 13 C 1.38946 * 120.00116 * 311.99791 * 11 9 7 14 14 N 1.31412 * 119.99735 * 167.11735 * 13 11 9 15 15 Si 1.86793 * 120.00254 * 347.11705 * 13 11 9 16 16 H 1.48503 * 109.47120 * 94.96675 * 15 13 11 17 17 H 1.48499 * 109.47595 * 214.96482 * 15 13 11 18 18 H 1.48500 * 109.47281 * 334.96890 * 15 13 11 19 19 H 1.09003 * 109.46913 * 205.68447 * 1 2 3 20 20 H 1.09001 * 109.46932 * 325.68306 * 1 2 3 21 21 H 1.08997 * 109.47618 * 85.67951 * 1 2 3 22 22 H 1.08999 * 117.48904 * 359.97438 * 4 2 1 23 23 H 1.08994 * 117.53332 * 214.95262 * 4 2 1 24 24 H 1.09000 * 109.47409 * 207.33372 * 6 5 4 25 25 H 1.09002 * 109.47354 * 87.33565 * 6 5 4 26 26 H 1.09003 * 109.47199 * 327.33601 * 6 5 4 27 27 H 1.09004 * 109.47064 * 84.54151 * 10 9 7 28 28 H 1.08998 * 109.47122 * 204.53641 * 10 9 7 29 29 H 1.09004 * 109.47379 * 324.54622 * 10 9 7 30 30 H 0.97006 * 120.00093 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9834 0.0000 4 6 2.2368 -1.1219 0.7647 5 6 2.2364 -1.1208 -0.7652 6 6 3.5489 -0.7757 -1.4717 7 6 1.3719 -2.1401 -1.4616 8 8 1.1892 -3.2273 -0.9559 9 7 0.8018 -1.8435 -2.6464 10 6 1.0958 -0.5666 -3.3014 11 6 -0.0531 -2.7369 -3.2383 12 1 -1.0062 -2.4009 -3.6193 13 6 0.3065 -4.0745 -3.3481 14 7 -0.5949 -4.9723 -3.6772 15 14 2.0712 -4.5966 -3.0279 16 1 2.2076 -5.0418 -1.6177 17 1 2.4294 -5.7149 -3.9368 18 1 2.9797 -3.4480 -3.2743 19 1 -0.3633 -0.9262 0.4454 20 1 -0.3633 0.8488 0.5794 21 1 -0.3634 0.0774 -1.0247 22 1 1.6114 -1.8593 1.2679 23 1 3.1721 -0.8771 1.2680 24 1 3.3329 -0.3438 -2.4489 25 1 4.1427 -1.6810 -1.5979 26 1 4.1063 -0.0563 -0.8717 27 1 2.0166 -0.6573 -3.8776 28 1 0.2747 -0.3027 -3.9680 29 1 1.2148 0.2103 -2.5462 30 1 -0.3437 -5.9062 -3.7542 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704353473.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -27.178024 kcal Electronic energy + Delta-G solvation = -13412.901007 eV Core-core repulsion = 11208.539989 eV Total energy + Delta-G solvation = -2204.361018 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.31728 -38.12411 -36.40118 -34.15686 -31.11042 -28.62084 -27.62271 -26.79713 -23.27053 -21.92021 -20.61110 -18.58487 -17.36163 -16.95610 -16.37361 -16.03478 -15.57698 -14.85504 -14.44301 -14.08223 -13.99751 -13.63548 -13.23131 -13.10698 -13.07956 -12.87650 -12.68866 -12.37888 -12.27096 -12.00322 -11.01290 -10.86968 -10.68812 -10.25128 -9.53960 -8.45271 -6.29002 1.16519 1.28353 1.44589 1.91817 2.38393 2.61841 2.83772 3.08104 3.67098 3.88552 3.93115 4.14614 4.42831 4.55251 4.66515 4.76543 4.80909 4.88512 4.90738 4.91723 4.97664 5.06670 5.17729 5.30019 5.45927 5.68631 5.84295 6.75182 6.89030 7.29856 7.87704 8.63336 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041618 B = 0.016052 C = 0.014891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.620696 B = 1743.878175 C = 1879.932047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 H 0.154 0.846 4 C -0.149 4.149 5 C -0.175 4.175 6 C -0.109 4.109 7 C 0.487 3.513 8 O -0.600 6.600 9 N -0.480 5.480 10 C 0.076 3.924 11 C -0.343 4.343 12 H 0.068 0.932 13 C 0.037 3.963 14 N -0.918 5.918 15 Si 0.972 3.028 16 H -0.288 1.288 17 H -0.304 1.304 18 H -0.263 1.263 19 H 0.023 0.977 20 H 0.092 0.908 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.131 0.869 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.545 14.063 5.138 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 H 0.171 0.829 4 C -0.186 4.186 5 C -0.178 4.178 6 C -0.166 4.166 7 C 0.278 3.722 8 O -0.486 6.486 9 N -0.202 5.202 10 C -0.067 4.067 11 C -0.471 4.471 12 H 0.086 0.914 13 C -0.166 4.166 14 N -0.556 5.556 15 Si 0.803 3.197 16 H -0.216 1.216 17 H -0.234 1.234 18 H -0.187 1.187 19 H 0.043 0.957 20 H 0.111 0.889 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.149 0.851 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.373 13.388 5.289 16.653 hybrid contribution 0.119 -1.198 -0.138 1.211 sum 8.492 12.190 5.151 15.724 Atomic orbital electron populations 1.21441 0.93609 1.01561 1.01982 1.22651 0.94809 0.94673 1.00136 0.82876 1.23210 1.03609 1.00770 0.91050 1.21580 0.99447 1.01157 0.95636 1.21414 0.92295 1.01546 1.01379 1.20478 0.82550 0.88145 0.81009 1.90440 1.64993 1.26258 1.66884 1.43693 1.41620 1.17839 1.17051 1.22076 1.01112 0.85178 0.98295 1.18834 0.99225 0.89544 1.39484 0.91381 1.26066 1.01387 0.96281 0.92896 1.69796 1.35462 1.02366 1.47965 0.85311 0.80682 0.77536 0.76161 1.21585 1.23394 1.18723 0.95729 0.88876 0.92903 0.91151 0.85126 0.90659 0.94307 0.87857 0.92585 0.91308 0.89133 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.17 71.98 0.66 -3.09 16 2 C -0.10 -2.70 5.26 -10.77 -0.06 -2.75 16 3 H 0.15 2.58 8.14 -2.38 -0.02 2.56 16 4 C -0.15 -4.41 9.41 30.62 0.29 -4.13 16 5 C -0.17 -5.96 1.40 -52.93 -0.07 -6.04 16 6 C -0.11 -2.94 9.43 71.98 0.68 -2.26 16 7 C 0.49 23.56 4.26 87.66 0.37 23.93 16 8 O -0.60 -35.44 12.20 -3.08 -0.04 -35.47 16 9 N -0.48 -23.37 2.49 -658.89 -1.64 -25.02 16 10 C 0.08 2.64 8.68 127.77 1.11 3.75 16 11 C -0.34 -20.39 9.64 84.04 0.81 -19.58 16 12 H 0.07 4.27 8.06 -2.91 -0.02 4.25 16 13 C 0.04 2.31 5.02 84.93 0.43 2.73 16 14 N -0.92 -59.82 13.96 21.66 0.30 -59.52 16 15 Si 0.97 54.01 24.58 68.60 1.69 55.70 16 16 H -0.29 -17.27 6.40 99.48 0.64 -16.64 16 17 H -0.30 -16.19 7.11 99.48 0.71 -15.48 16 18 H -0.26 -13.45 7.08 99.48 0.70 -12.74 16 19 H 0.02 0.87 7.90 -2.39 -0.02 0.85 16 20 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.05 1.68 7.14 -2.39 -0.02 1.66 16 22 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 23 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 24 H 0.07 1.88 5.70 -2.39 -0.01 1.86 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.10 1.88 8.11 -2.39 -0.02 1.86 16 27 H 0.06 1.79 7.23 -2.38 -0.02 1.77 16 28 H 0.07 2.32 8.00 -2.39 -0.02 2.30 16 29 H 0.09 2.51 5.39 -2.38 -0.01 2.50 16 30 H 0.27 16.76 8.31 -92.70 -0.77 15.99 16 Total: -1.00 -78.07 242.40 5.56 -72.51 By element: Atomic # 1 Polarization: -1.80 SS G_CDS: 1.04 Total: -0.76 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 4.22 Total: -7.44 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.34 Total: -84.53 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.04 Total: -35.47 kcal Atomic # 14 Polarization: 54.01 SS G_CDS: 1.69 Total: 55.70 kcal Total: -78.07 5.56 -72.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704353473.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.332 kcal (2) G-P(sol) polarization free energy of solvation -78.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds