Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 115.56433 * 2 1 4 4 C 1.52997 * 117.49797 * 214.30465 * 2 1 3 5 5 C 1.53000 * 60.00347 * 252.51337 * 4 2 1 6 6 C 1.52989 * 117.50008 * 252.51154 * 5 4 2 7 7 C 1.50697 * 117.49504 * 107.48912 * 5 4 2 8 8 O 1.21284 * 120.00304 * 291.38035 * 7 5 4 9 9 N 1.34777 * 120.00030 * 111.38036 * 7 5 4 10 10 C 1.46504 * 120.00110 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47200 * 180.02562 * 10 9 7 12 12 H 1.08009 * 119.99836 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00396 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00439 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99731 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47220 * 90.00361 * 15 13 11 17 17 H 1.48499 * 109.47326 * 210.00444 * 15 13 11 18 18 H 1.48500 * 109.47139 * 330.00318 * 15 13 11 19 19 H 1.08998 * 109.47374 * 274.31326 * 1 2 3 20 20 H 1.08999 * 109.47059 * 34.31402 * 1 2 3 21 21 H 1.08995 * 109.47306 * 154.31008 * 1 2 3 22 22 H 1.09002 * 117.49910 * 145.02477 * 4 2 1 23 23 H 1.09002 * 117.49884 * 0.02562 * 4 2 1 24 24 H 1.09002 * 109.47378 * 128.62017 * 6 5 4 25 25 H 1.09004 * 109.47432 * 248.62323 * 6 5 4 26 26 H 1.09003 * 109.47662 * 8.62317 * 6 5 4 27 27 H 0.97003 * 119.99904 * 359.97438 * 9 7 5 28 28 H 1.09009 * 109.46719 * 299.99810 * 10 9 7 29 29 H 1.08993 * 109.47239 * 59.99978 * 10 9 7 30 30 H 0.96997 * 119.99856 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2364 -1.1211 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 3.5488 -0.7760 1.4715 7 6 1.3719 -2.1406 1.4609 8 8 0.1637 -2.0532 1.4012 9 7 1.9413 -3.1496 2.1495 10 6 1.1009 -4.1404 2.8264 11 6 1.9765 -5.1532 3.5182 12 1 3.0516 -5.0676 3.4592 13 6 1.4054 -6.1897 4.2256 14 7 2.1695 -7.0738 4.8289 15 14 -0.4539 -6.3382 4.3270 16 1 -0.9467 -7.1668 3.1975 17 1 -0.8299 -6.9797 5.6124 18 1 -1.0633 -4.9861 4.2517 19 1 -0.3634 0.0773 1.0247 20 1 -0.3633 0.8488 -0.5793 21 1 -0.3633 -0.9260 -0.4455 22 1 3.1715 -0.8753 -1.2681 23 1 1.6111 -1.8584 -1.2684 24 1 3.3700 0.0072 2.2083 25 1 3.9366 -1.6635 1.9716 26 1 4.2752 -0.4257 0.7381 27 1 2.9077 -3.2196 2.1969 28 1 0.4720 -3.6407 3.5632 29 1 0.4713 -4.6445 2.0932 30 1 1.7676 -7.8032 5.3262 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704357927.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = -46.066499 kcal Electronic energy + Delta-G solvation = -12520.662496 eV Core-core repulsion = 10315.482412 eV Total energy + Delta-G solvation = -2205.180083 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.21781 -38.01426 -36.16658 -34.48560 -31.32941 -29.66432 -27.94455 -25.17622 -23.14602 -21.88790 -20.79646 -18.79455 -17.37395 -17.11388 -16.24402 -16.05154 -15.61543 -14.91698 -14.57998 -14.21584 -13.96642 -13.76094 -13.51026 -13.08487 -13.06239 -12.88673 -12.71877 -12.25234 -11.95781 -11.69473 -11.06211 -10.94517 -10.74238 -10.39074 -9.91946 -8.42855 -6.50227 1.30068 1.32129 1.44984 1.60327 2.25382 2.41683 2.83800 2.92647 3.61314 3.84079 3.92058 4.05750 4.48491 4.66453 4.76059 4.84951 4.87664 4.94842 4.98988 4.99523 5.05080 5.19284 5.23693 5.29530 5.48419 5.61701 6.06382 6.50331 6.83584 7.12879 7.40328 8.71968 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055190 B = 0.008826 C = 0.007909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.218441 B = 3171.838567 C = 3539.342076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.112 4.112 3 H 0.141 0.859 4 C -0.135 4.135 5 C -0.180 4.180 6 C -0.109 4.109 7 C 0.528 3.472 8 O -0.588 6.588 9 N -0.705 5.705 10 C 0.233 3.767 11 C -0.549 4.549 12 H 0.058 0.942 13 C 0.027 3.973 14 N -0.930 5.930 15 Si 0.938 3.062 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.262 1.262 19 H 0.041 0.959 20 H 0.072 0.928 21 H 0.038 0.962 22 H 0.137 0.863 23 H 0.082 0.918 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.406 0.594 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 13.466 -9.496 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 H 0.159 0.841 4 C -0.172 4.172 5 C -0.183 4.183 6 C -0.166 4.166 7 C 0.316 3.684 8 O -0.469 6.469 9 N -0.354 5.354 10 C 0.110 3.890 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.173 4.173 14 N -0.568 5.568 15 Si 0.762 3.238 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.187 1.187 19 H 0.060 0.940 20 H 0.091 0.909 21 H 0.057 0.943 22 H 0.155 0.845 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.242 0.758 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.644 13.325 -9.395 16.316 hybrid contribution -0.375 -0.822 0.552 1.059 sum 0.268 12.503 -8.842 15.316 Atomic orbital electron populations 1.21281 0.93188 1.00963 1.01129 1.22580 0.95329 0.94560 1.00582 0.84126 1.23344 1.03887 1.00729 0.89256 1.21645 0.99738 1.00798 0.96158 1.21365 0.92539 1.01900 1.00805 1.20371 0.88082 0.81697 0.78249 1.90621 1.16394 1.76353 1.63564 1.46087 1.11075 1.26749 1.51535 1.19078 0.91284 0.87167 0.91518 1.21287 0.94321 1.10113 1.32964 0.92372 1.25600 1.03031 0.94648 0.94038 1.69977 1.37567 1.15156 1.34136 0.85846 0.80068 0.79293 0.78614 1.18938 1.19532 1.18678 0.93964 0.90923 0.94275 0.84495 0.89968 0.91430 0.92495 0.88639 0.75785 0.97113 0.97258 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.01 8.43 71.98 0.61 -2.40 16 2 C -0.11 -2.60 6.13 -10.79 -0.07 -2.67 16 3 H 0.14 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.13 -2.99 9.52 30.59 0.29 -2.70 16 5 C -0.18 -4.97 2.62 -52.93 -0.14 -5.10 16 6 C -0.11 -2.32 9.79 71.98 0.70 -1.62 16 7 C 0.53 20.82 7.37 87.66 0.65 21.47 16 8 O -0.59 -27.07 13.10 -3.04 -0.04 -27.11 16 9 N -0.70 -29.91 5.45 -466.78 -2.54 -32.45 16 10 C 0.23 11.89 4.50 85.63 0.38 12.27 16 11 C -0.55 -31.11 9.83 25.60 0.25 -30.86 16 12 H 0.06 3.46 7.84 -2.91 -0.02 3.43 16 13 C 0.03 1.57 5.47 84.65 0.46 2.03 16 14 N -0.93 -56.11 13.96 21.44 0.30 -55.82 16 15 Si 0.94 44.84 27.47 68.60 1.88 46.73 16 16 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.26 -12.52 6.54 99.48 0.65 -11.87 16 19 H 0.04 1.37 7.26 -2.39 -0.02 1.36 16 20 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.04 1.26 7.01 -2.39 -0.02 1.24 16 22 H 0.14 2.05 8.05 -2.39 -0.02 2.03 16 23 H 0.08 2.09 8.05 -2.39 -0.02 2.07 16 24 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.32 6.38 -2.38 -0.02 1.30 16 26 H 0.09 1.42 7.90 -2.39 -0.02 1.41 16 27 H 0.41 15.40 6.62 -92.71 -0.61 14.78 16 28 H 0.01 0.59 7.20 -2.38 -0.02 0.57 16 29 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -67.97 251.00 3.20 -64.77 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.46 Total: 13.46 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 3.14 Total: -9.57 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -2.24 Total: -88.27 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.04 Total: -27.11 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.73 kcal Total: -67.97 3.20 -64.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357927.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.701 kcal (2) G-P(sol) polarization free energy of solvation -67.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds