Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 115.56050 * 2 1 4 4 C 1.53000 * 117.49761 * 145.69304 * 2 1 3 5 5 C 1.53002 * 117.49475 * 214.31441 * 2 1 3 6 6 C 1.52995 * 117.51595 * 145.03090 * 5 2 1 7 7 C 1.50699 * 117.49891 * 359.97438 * 5 2 1 8 8 O 1.21280 * 120.00276 * 359.97438 * 7 5 2 9 9 N 1.34782 * 119.99692 * 179.97438 * 7 5 2 10 10 C 1.46497 * 120.00016 * 180.02562 * 9 7 5 11 11 C 1.50694 * 109.47115 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08992 * 109.46996 * 205.68809 * 1 2 3 20 20 H 1.09001 * 109.46456 * 325.68493 * 1 2 3 21 21 H 1.08994 * 109.47100 * 85.68340 * 1 2 3 22 22 H 1.08995 * 117.49830 * 359.97438 * 4 2 1 23 23 H 1.08998 * 117.49364 * 214.97832 * 4 2 1 24 24 H 1.09004 * 109.47395 * 299.87827 * 6 5 2 25 25 H 1.08999 * 109.47667 * 59.87645 * 6 5 2 26 26 H 1.09006 * 109.47354 * 179.88251 * 6 5 2 27 27 H 0.97001 * 119.99765 * 359.97438 * 9 7 5 28 28 H 1.09007 * 109.47078 * 59.99547 * 10 9 7 29 29 H 1.09003 * 109.46733 * 300.00270 * 10 9 7 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7649 5 6 2.2364 -1.1210 -0.7651 6 6 3.5491 -0.7765 -1.4715 7 6 1.3719 -2.1409 -1.4605 8 8 0.1637 -2.0540 -1.4001 9 7 1.9415 -3.1495 -2.1495 10 6 1.1011 -4.1407 -2.8260 11 6 1.9768 -5.1530 -3.5184 12 1 3.0518 -5.0665 -3.4608 13 6 1.4055 -6.1891 -4.2264 14 7 0.0965 -6.2941 -4.2971 15 14 2.4910 -7.4435 -5.0853 16 1 1.6391 -8.4483 -5.7710 17 1 3.3474 -6.7554 -6.0845 18 1 3.3492 -8.1243 -4.0828 19 1 -0.3633 -0.9260 0.4454 20 1 -0.3632 0.8488 0.5794 21 1 -0.3633 0.0773 -1.0247 22 1 1.6113 -1.8583 1.2685 23 1 3.1716 -0.8752 1.2682 24 1 3.3702 0.0052 -2.2098 25 1 4.2748 -0.4244 -0.7384 26 1 3.9376 -1.6647 -1.9698 27 1 2.9078 -3.2188 -2.1981 28 1 0.4714 -3.6413 -3.5624 29 1 0.4721 -4.6450 -2.0924 30 1 -0.3054 -7.0228 -4.7955 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704357930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = -28.240602 kcal Electronic energy + Delta-G solvation = -12471.876433 eV Core-core repulsion = 10267.469338 eV Total energy + Delta-G solvation = -2204.407095 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.67143 -36.51570 -34.18339 -32.38848 -29.88186 -27.24325 -26.81258 -23.57440 -21.63006 -20.70287 -18.98104 -16.62640 -15.65379 -15.24332 -14.70801 -14.31130 -14.08878 -13.21056 -12.91184 -12.69120 -12.23864 -12.10290 -11.95476 -11.77540 -11.57845 -11.17301 -10.97300 -10.86789 -10.28396 -9.87068 -9.57764 -9.38576 -8.73411 -8.70487 -7.82876 -6.15544 -4.22473 3.18896 3.25890 3.30501 3.32119 4.00649 4.14666 4.37879 4.75793 5.00336 5.09657 5.20421 5.41618 5.53687 5.75295 5.86451 5.88382 5.97663 6.09037 6.22723 6.29654 6.37811 6.81890 7.33287 7.49109 7.53775 7.69096 7.98818 8.67715 8.80601 9.16251 9.44422 10.94661 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063030 B = 0.007882 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.125979 B = 3551.674421 C = 3855.484536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.113 4.113 7 C 0.533 3.467 8 O -0.551 6.551 9 N -0.709 5.709 10 C 0.250 3.750 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.285 1.285 17 H -0.275 1.275 18 H -0.275 1.275 19 H 0.064 0.936 20 H 0.042 0.958 21 H 0.068 0.932 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.390 0.610 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 9.640 6.787 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 H 0.122 0.878 4 C -0.190 4.190 5 C -0.166 4.166 6 C -0.170 4.170 7 C 0.317 3.683 8 O -0.430 6.430 9 N -0.357 5.357 10 C 0.130 3.870 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.210 1.210 17 H -0.201 1.201 18 H -0.201 1.201 19 H 0.083 0.917 20 H 0.061 0.939 21 H 0.087 0.913 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.223 0.777 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.393 9.534 6.714 12.848 hybrid contribution 1.076 -0.844 -0.581 1.486 sum 6.469 8.690 6.133 12.449 Atomic orbital electron populations 1.21336 0.91639 1.01005 1.02587 1.22379 0.96408 0.93163 1.01851 0.87754 1.23186 1.02626 1.01859 0.91329 1.21690 0.98927 1.01223 0.94800 1.21330 0.93606 1.02023 1.00033 1.19380 0.87832 0.81714 0.79339 1.90644 1.14462 1.75476 1.62457 1.46461 1.10679 1.27265 1.51300 1.19090 0.90524 0.85449 0.91962 1.21201 0.93100 1.10597 1.33330 0.91991 1.24954 0.95145 0.97766 0.96133 1.69969 1.09385 1.31996 1.40974 0.86472 0.80098 0.80695 0.79631 1.21045 1.20059 1.20067 0.91676 0.93928 0.91338 0.88472 0.88380 0.91878 0.92052 0.91609 0.77689 0.95572 0.95609 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 8.43 37.16 0.31 -1.35 16 2 C -0.12 -1.65 6.13 -90.61 -0.56 -2.21 16 3 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.15 -2.03 9.52 -26.73 -0.25 -2.29 16 5 C -0.16 -2.53 2.62 -155.66 -0.41 -2.94 16 6 C -0.11 -1.41 9.79 37.16 0.36 -1.05 16 7 C 0.53 11.09 7.37 -10.98 -0.08 11.01 16 8 O -0.55 -13.29 13.10 5.56 0.07 -13.22 16 9 N -0.71 -15.54 5.45 -61.47 -0.33 -15.87 16 10 C 0.25 6.78 5.43 -5.20 -0.03 6.75 16 11 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 15 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H 0.06 1.12 7.01 -51.93 -0.36 0.75 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.07 1.19 7.26 -51.93 -0.38 0.81 16 22 H 0.10 1.40 8.05 -51.93 -0.42 0.98 16 23 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.62 7.90 -51.93 -0.41 0.21 16 26 H 0.06 0.83 6.38 -51.93 -0.33 0.50 16 27 H 0.39 7.46 6.62 -40.82 -0.27 7.19 16 28 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 254.60 15.07 3.84 3.84 Total: -1.00 -31.17 254.60 -6.01 -37.18 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.24 Total: 3.39 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -1.07 Total: -5.70 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.40 Total: -41.50 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.22 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.17 -6.01 -37.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.944 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds