Wall clock time and date at job start Mon Mar 30 2020 02:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 115.56050 * 2 1 4 4 C 1.53000 * 117.49761 * 145.69304 * 2 1 3 5 5 C 1.53002 * 117.49475 * 214.31441 * 2 1 3 6 6 C 1.52995 * 117.51595 * 145.03090 * 5 2 1 7 7 C 1.50699 * 117.49891 * 359.97438 * 5 2 1 8 8 O 1.21280 * 120.00276 * 359.97438 * 7 5 2 9 9 N 1.34782 * 119.99692 * 179.97438 * 7 5 2 10 10 C 1.46497 * 120.00016 * 180.02562 * 9 7 5 11 11 C 1.50694 * 109.47115 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08992 * 109.46996 * 205.68809 * 1 2 3 20 20 H 1.09001 * 109.46456 * 325.68493 * 1 2 3 21 21 H 1.08994 * 109.47100 * 85.68340 * 1 2 3 22 22 H 1.08995 * 117.49830 * 359.97438 * 4 2 1 23 23 H 1.08998 * 117.49364 * 214.97832 * 4 2 1 24 24 H 1.09004 * 109.47395 * 299.87827 * 6 5 2 25 25 H 1.08999 * 109.47667 * 59.87645 * 6 5 2 26 26 H 1.09006 * 109.47354 * 179.88251 * 6 5 2 27 27 H 0.97001 * 119.99765 * 359.97438 * 9 7 5 28 28 H 1.09007 * 109.47078 * 59.99547 * 10 9 7 29 29 H 1.09003 * 109.46733 * 300.00270 * 10 9 7 30 30 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7649 5 6 2.2364 -1.1210 -0.7651 6 6 3.5491 -0.7765 -1.4715 7 6 1.3719 -2.1409 -1.4605 8 8 0.1637 -2.0540 -1.4001 9 7 1.9415 -3.1495 -2.1495 10 6 1.1011 -4.1407 -2.8260 11 6 1.9768 -5.1530 -3.5184 12 1 3.0518 -5.0665 -3.4608 13 6 1.4055 -6.1891 -4.2264 14 7 0.0965 -6.2941 -4.2971 15 14 2.4910 -7.4435 -5.0853 16 1 1.6391 -8.4483 -5.7710 17 1 3.3474 -6.7554 -6.0845 18 1 3.3492 -8.1243 -4.0828 19 1 -0.3633 -0.9260 0.4454 20 1 -0.3632 0.8488 0.5794 21 1 -0.3633 0.0773 -1.0247 22 1 1.6113 -1.8583 1.2685 23 1 3.1716 -0.8752 1.2682 24 1 3.3702 0.0052 -2.2098 25 1 4.2748 -0.4244 -0.7384 26 1 3.9376 -1.6647 -1.9698 27 1 2.9078 -3.2188 -2.1981 28 1 0.4714 -3.6413 -3.5624 29 1 0.4721 -4.6450 -2.0924 30 1 -0.3054 -7.0228 -4.7955 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704357930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:01 Heat of formation + Delta-G solvation = -49.791960 kcal Electronic energy + Delta-G solvation = -12472.810970 eV Core-core repulsion = 10267.469338 eV Total energy + Delta-G solvation = -2205.341632 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.17869 -37.97309 -36.14568 -34.43107 -31.16446 -29.20897 -27.93838 -25.43960 -23.32587 -21.89646 -20.69538 -18.50816 -17.25112 -17.09813 -16.21704 -16.08505 -15.61517 -14.76898 -14.30032 -14.09314 -13.87089 -13.71309 -13.49107 -13.04502 -12.98308 -12.85507 -12.69168 -12.26626 -12.22243 -11.53902 -11.05369 -10.80907 -10.72602 -10.35366 -9.81519 -8.31197 -6.48636 1.41505 1.46054 1.54379 1.64629 2.30409 2.55162 2.85367 3.03373 3.62104 3.86931 3.92960 4.08065 4.48152 4.71116 4.85022 4.86046 4.93778 4.98776 5.02524 5.10625 5.19175 5.20458 5.30960 5.45724 5.58832 5.69728 5.82879 6.62129 6.91421 7.20972 7.49425 8.80918 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063030 B = 0.007882 C = 0.007261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.125979 B = 3551.674421 C = 3855.484536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 H 0.143 0.857 4 C -0.134 4.134 5 C -0.179 4.179 6 C -0.107 4.107 7 C 0.522 3.478 8 O -0.593 6.593 9 N -0.706 5.706 10 C 0.268 3.732 11 C -0.560 4.560 12 H 0.083 0.917 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.987 3.013 16 H -0.284 1.284 17 H -0.261 1.261 18 H -0.261 1.261 19 H 0.035 0.965 20 H 0.073 0.927 21 H 0.038 0.962 22 H 0.078 0.922 23 H 0.140 0.860 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.405 0.595 28 H -0.014 1.014 29 H -0.015 1.015 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.430 10.437 7.374 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.132 4.132 3 H 0.161 0.839 4 C -0.171 4.171 5 C -0.182 4.182 6 C -0.164 4.164 7 C 0.310 3.690 8 O -0.475 6.475 9 N -0.356 5.356 10 C 0.145 3.855 11 C -0.597 4.597 12 H 0.101 0.899 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.209 1.209 17 H -0.186 1.186 18 H -0.186 1.186 19 H 0.054 0.946 20 H 0.092 0.908 21 H 0.057 0.943 22 H 0.097 0.903 23 H 0.158 0.842 24 H 0.085 0.915 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.242 0.758 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.435 10.361 7.322 15.235 hybrid contribution 0.036 -1.043 -0.711 1.263 sum 8.471 9.318 6.611 14.223 Atomic orbital electron populations 1.21271 0.93496 1.00821 1.00961 1.22575 0.95132 0.94672 1.00813 0.83901 1.23333 1.03882 1.00600 0.89309 1.21667 0.99798 1.00643 0.96113 1.21362 0.92306 1.01965 1.00786 1.20484 0.88091 0.81950 0.78446 1.90628 1.16844 1.76429 1.63642 1.46233 1.10987 1.26884 1.51468 1.18516 0.90578 0.86119 0.90245 1.21590 0.94063 1.10713 1.33364 0.89920 1.26103 0.96617 1.00154 0.96720 1.70138 1.11831 1.33033 1.41950 0.85181 0.77938 0.77398 0.78552 1.20929 1.18554 1.18593 0.94604 0.90794 0.94257 0.90325 0.84170 0.91536 0.88444 0.92217 0.75826 0.99653 0.99702 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 8.43 71.98 0.61 -2.69 16 2 C -0.11 -2.84 6.13 -10.79 -0.07 -2.90 16 3 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 4 C -0.13 -3.16 9.52 30.60 0.29 -2.87 16 5 C -0.18 -5.22 2.62 -52.93 -0.14 -5.36 16 6 C -0.11 -2.31 9.79 71.98 0.70 -1.61 16 7 C 0.52 22.32 7.37 87.66 0.65 22.96 16 8 O -0.59 -30.33 13.10 -3.03 -0.04 -30.37 16 9 N -0.71 -31.76 5.45 -466.78 -2.54 -34.30 16 10 C 0.27 15.31 5.43 85.63 0.46 15.77 16 11 C -0.56 -31.30 9.28 25.60 0.24 -31.06 16 12 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 15 Si 0.99 42.80 29.54 68.60 2.03 44.82 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 19 H 0.03 1.26 7.01 -2.39 -0.02 1.25 16 20 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 21 H 0.04 1.40 7.26 -2.39 -0.02 1.38 16 22 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 23 H 0.14 2.18 8.05 -2.39 -0.02 2.17 16 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 1.43 7.90 -2.39 -0.02 1.41 16 26 H 0.06 1.35 6.38 -2.38 -0.02 1.34 16 27 H 0.41 15.40 6.62 -92.71 -0.61 14.79 16 28 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 29 H -0.01 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -71.74 254.60 3.45 -68.29 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.51 Total: 15.50 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 3.21 Total: -7.08 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.26 Total: -91.17 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.04 Total: -30.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -71.74 3.45 -68.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.497 kcal (2) G-P(sol) polarization free energy of solvation -71.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds