Wall clock time and date at job start Mon Mar 30 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 115.56537 * 2 1 4 4 C 1.52998 * 117.49765 * 214.31446 * 2 1 3 5 5 C 1.52999 * 117.49939 * 145.69092 * 2 1 3 6 6 C 1.53004 * 117.51984 * 0.02562 * 5 2 1 7 7 C 1.50703 * 117.50021 * 214.97422 * 5 2 1 8 8 O 1.21273 * 119.99926 * 359.97438 * 7 5 2 9 9 N 1.34775 * 120.00072 * 179.97438 * 7 5 2 10 10 C 1.46499 * 120.00180 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.47260 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 H 1.09002 * 109.46837 * 274.31056 * 1 2 3 20 20 H 1.08998 * 109.47154 * 34.30616 * 1 2 3 21 21 H 1.08999 * 109.47355 * 154.31317 * 1 2 3 22 22 H 1.09001 * 117.50051 * 145.01855 * 4 2 1 23 23 H 1.09003 * 117.50192 * 359.97438 * 4 2 1 24 24 H 1.09001 * 109.46482 * 299.87794 * 6 5 2 25 25 H 1.08999 * 109.47018 * 59.87789 * 6 5 2 26 26 H 1.08991 * 109.47117 * 179.88331 * 6 5 2 27 27 H 0.97002 * 120.00040 * 359.97438 * 9 7 5 28 28 H 1.09000 * 109.47197 * 59.99093 * 10 9 7 29 29 H 1.09007 * 109.46342 * 299.99665 * 10 9 7 30 30 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2364 -1.1210 0.7650 6 6 1.3593 -2.1568 1.4711 7 6 3.5293 -0.7812 1.4607 8 8 3.9721 0.3462 1.4007 9 7 4.1935 -1.7302 2.1496 10 6 5.4501 -1.3998 2.8265 11 6 5.9862 -2.6269 3.5177 12 1 5.4448 -3.5596 3.4590 13 6 7.1645 -2.5574 4.2300 14 7 7.8236 -1.4216 4.3017 15 14 7.8250 -4.0766 5.0933 16 1 8.0731 -5.1458 4.0931 17 1 9.0963 -3.7404 5.7833 18 1 6.8313 -4.5513 6.0894 19 1 -0.3633 0.0772 1.0248 20 1 -0.3633 0.8489 -0.5792 21 1 -0.3634 -0.9261 -0.4454 22 1 3.1715 -0.8751 -1.2684 23 1 1.6112 -1.8587 -1.2681 24 1 0.7312 -1.6582 2.2093 25 1 0.7288 -2.6595 0.7377 26 1 1.9929 -2.8905 1.9692 27 1 3.8392 -2.6319 2.1980 28 1 5.2710 -0.6164 3.5629 29 1 6.1765 -1.0498 2.0930 30 1 8.6525 -1.3726 4.8032 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704357943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:03 Heat of formation + Delta-G solvation = -32.089051 kcal Electronic energy + Delta-G solvation = -12347.126534 eV Core-core repulsion = 10142.552558 eV Total energy + Delta-G solvation = -2204.573976 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.60332 -36.77723 -34.17424 -32.34628 -29.55618 -27.78595 -27.09111 -23.48007 -21.78135 -20.42051 -18.68920 -17.07958 -15.89318 -15.23120 -14.53192 -14.42888 -13.86790 -13.42178 -13.32494 -12.78451 -12.35885 -12.22105 -11.89990 -11.75900 -11.62365 -11.18529 -10.99117 -10.86438 -10.30290 -10.02273 -9.62042 -9.38700 -8.93855 -8.71775 -7.84870 -6.15376 -4.22502 3.16512 3.26097 3.30657 3.32312 3.98304 4.12900 4.37138 4.80827 4.87238 5.07953 5.20528 5.37892 5.38887 5.68678 5.70289 5.80822 5.91259 5.94269 5.98094 6.10825 6.30976 6.45996 7.32872 7.47116 7.53352 7.68551 7.98558 8.66632 8.79910 9.14337 9.44306 10.94886 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071471 B = 0.007309 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.671825 B = 3830.229842 C = 4055.017395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.125 4.125 3 H 0.115 0.885 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.111 4.111 7 C 0.533 3.467 8 O -0.558 6.558 9 N -0.707 5.707 10 C 0.249 3.751 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 H 0.060 0.940 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.099 0.901 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.390 0.610 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 -2.354 -6.853 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 H 0.133 0.867 4 C -0.187 4.187 5 C -0.163 4.163 6 C -0.169 4.169 7 C 0.317 3.683 8 O -0.437 6.437 9 N -0.355 5.355 10 C 0.129 3.871 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.201 1.201 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.115 0.885 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.224 0.776 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.088 -1.472 -6.778 13.937 hybrid contribution 0.395 -1.233 0.581 1.420 sum -11.693 -2.706 -6.197 13.507 Atomic orbital electron populations 1.21349 0.92710 1.01661 1.01895 1.22376 0.94783 0.95118 1.02063 0.86736 1.23167 1.02816 1.01424 0.91340 1.21674 0.97410 1.02476 0.94771 1.21306 0.98591 0.96944 1.00035 1.19395 0.84298 0.85281 0.79302 1.90634 1.69028 1.21376 1.62712 1.46423 1.25786 1.12146 1.51182 1.19115 0.79313 0.96712 0.92008 1.21192 1.07972 0.95802 1.33231 0.91961 1.24952 0.96381 0.96528 0.96133 1.69966 1.16447 1.25064 1.40870 0.86466 0.78258 0.82493 0.79635 1.20056 1.21048 1.20057 0.92090 0.92132 0.92567 0.88526 0.88256 0.91828 0.91994 0.91663 0.77587 0.95526 0.95578 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.22 37.16 0.34 -0.90 16 2 C -0.12 -1.73 5.92 -90.62 -0.54 -2.27 16 3 H 0.11 1.81 7.67 -51.93 -0.40 1.41 16 4 C -0.15 -2.00 9.52 -26.73 -0.25 -2.25 16 5 C -0.16 -2.50 2.62 -155.66 -0.41 -2.91 16 6 C -0.11 -1.40 8.82 37.16 0.33 -1.07 16 7 C 0.53 11.34 7.39 -10.98 -0.08 11.26 16 8 O -0.56 -14.13 16.26 5.56 0.09 -14.04 16 9 N -0.71 -15.65 5.45 -61.47 -0.33 -15.99 16 10 C 0.25 6.81 5.43 -5.19 -0.03 6.78 16 11 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 12 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.51 7.77 -51.93 -0.40 0.10 16 22 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 23 H 0.10 1.06 7.96 -51.93 -0.41 0.64 16 24 H 0.06 0.76 8.03 -51.93 -0.42 0.35 16 25 H 0.06 0.63 7.77 -51.93 -0.40 0.22 16 26 H 0.06 0.82 6.38 -51.93 -0.33 0.49 16 27 H 0.39 7.50 6.62 -40.82 -0.27 7.23 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -31.95 258.18 -5.97 -37.92 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.28 Total: 2.93 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.05 Total: -5.01 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.40 Total: -41.70 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.95 -5.97 -37.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.830 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds