Wall clock time and date at job start Mon Mar 30 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 115.56537 * 2 1 4 4 C 1.52998 * 117.49765 * 214.31446 * 2 1 3 5 5 C 1.52999 * 117.49939 * 145.69092 * 2 1 3 6 6 C 1.53004 * 117.51984 * 0.02562 * 5 2 1 7 7 C 1.50703 * 117.50021 * 214.97422 * 5 2 1 8 8 O 1.21273 * 119.99926 * 359.97438 * 7 5 2 9 9 N 1.34775 * 120.00072 * 179.97438 * 7 5 2 10 10 C 1.46499 * 120.00180 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.47260 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27562 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47266 * 60.00049 * 15 13 11 17 17 H 1.48504 * 109.46970 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47383 * 299.99456 * 15 13 11 19 19 H 1.09002 * 109.46837 * 274.31056 * 1 2 3 20 20 H 1.08998 * 109.47154 * 34.30616 * 1 2 3 21 21 H 1.08999 * 109.47355 * 154.31317 * 1 2 3 22 22 H 1.09001 * 117.50051 * 145.01855 * 4 2 1 23 23 H 1.09003 * 117.50192 * 359.97438 * 4 2 1 24 24 H 1.09001 * 109.46482 * 299.87794 * 6 5 2 25 25 H 1.08999 * 109.47018 * 59.87789 * 6 5 2 26 26 H 1.08991 * 109.47117 * 179.88331 * 6 5 2 27 27 H 0.97002 * 120.00040 * 359.97438 * 9 7 5 28 28 H 1.09000 * 109.47197 * 59.99093 * 10 9 7 29 29 H 1.09007 * 109.46342 * 299.99665 * 10 9 7 30 30 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2364 -1.1210 0.7650 6 6 1.3593 -2.1568 1.4711 7 6 3.5293 -0.7812 1.4607 8 8 3.9721 0.3462 1.4007 9 7 4.1935 -1.7302 2.1496 10 6 5.4501 -1.3998 2.8265 11 6 5.9862 -2.6269 3.5177 12 1 5.4448 -3.5596 3.4590 13 6 7.1645 -2.5574 4.2300 14 7 7.8236 -1.4216 4.3017 15 14 7.8250 -4.0766 5.0933 16 1 8.0731 -5.1458 4.0931 17 1 9.0963 -3.7404 5.7833 18 1 6.8313 -4.5513 6.0894 19 1 -0.3633 0.0772 1.0248 20 1 -0.3633 0.8489 -0.5792 21 1 -0.3634 -0.9261 -0.4454 22 1 3.1715 -0.8751 -1.2684 23 1 1.6112 -1.8587 -1.2681 24 1 0.7312 -1.6582 2.2093 25 1 0.7288 -2.6595 0.7377 26 1 1.9929 -2.8905 1.9692 27 1 3.8392 -2.6319 2.1980 28 1 5.2710 -0.6164 3.5629 29 1 6.1765 -1.0498 2.0930 30 1 8.6525 -1.3726 4.8032 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704357943.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:03 Heat of formation + Delta-G solvation = -54.467000 kcal Electronic energy + Delta-G solvation = -12348.096914 eV Core-core repulsion = 10142.552558 eV Total energy + Delta-G solvation = -2205.544357 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.14038 -38.22580 -36.19780 -34.41769 -30.77271 -29.07036 -28.67462 -25.35627 -23.41122 -21.77155 -20.31888 -18.65592 -17.75319 -17.09913 -16.36969 -16.15631 -15.26798 -14.72169 -14.49096 -14.18657 -13.93514 -13.80499 -13.42577 -13.07214 -12.92107 -12.70265 -12.69167 -12.24171 -12.19890 -11.55448 -11.18560 -10.82210 -10.74294 -10.60247 -9.88075 -8.31482 -6.49306 1.41890 1.46567 1.54946 1.57611 2.28911 2.51275 2.84209 3.03155 3.67457 3.78734 3.87340 4.07547 4.42937 4.69511 4.81204 4.82673 4.93231 5.01651 5.03797 5.08679 5.17844 5.21998 5.30252 5.44874 5.48490 5.65358 5.80886 6.60958 6.86055 7.19933 7.43463 8.80808 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071471 B = 0.007309 C = 0.006903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.671825 B = 3830.229842 C = 4055.017395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.124 4.124 3 H 0.084 0.916 4 C -0.132 4.132 5 C -0.175 4.175 6 C -0.106 4.106 7 C 0.524 3.476 8 O -0.609 6.609 9 N -0.702 5.702 10 C 0.265 3.735 11 C -0.559 4.559 12 H 0.084 0.916 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.988 3.012 16 H -0.261 1.261 17 H -0.284 1.284 18 H -0.261 1.261 19 H 0.062 0.938 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.141 0.859 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.407 0.593 28 H -0.014 1.014 29 H -0.015 1.015 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 -4.944 -7.301 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.142 4.142 3 H 0.102 0.898 4 C -0.169 4.169 5 C -0.178 4.178 6 C -0.163 4.163 7 C 0.312 3.688 8 O -0.492 6.492 9 N -0.351 5.351 10 C 0.143 3.857 11 C -0.597 4.597 12 H 0.102 0.898 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.811 3.189 16 H -0.185 1.185 17 H -0.210 1.210 18 H -0.185 1.185 19 H 0.081 0.919 20 H 0.091 0.909 21 H 0.100 0.900 22 H 0.097 0.903 23 H 0.159 0.841 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.244 0.756 28 H 0.004 0.996 29 H 0.003 0.997 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.098 -4.091 -7.246 16.370 hybrid contribution 1.016 -0.320 0.670 1.258 sum -13.082 -4.411 -6.576 15.292 Atomic orbital electron populations 1.21365 0.89357 1.03606 1.02568 1.22484 0.97151 0.93481 1.01132 0.89812 1.23332 1.02593 1.01724 0.89298 1.21646 0.94974 1.05092 0.96057 1.21350 0.98279 0.95881 1.00802 1.20525 0.85830 0.84155 0.78335 1.90600 1.70806 1.23509 1.64267 1.46184 1.24377 1.13416 1.51135 1.18570 0.80775 0.96071 0.90325 1.21574 1.08556 0.96264 1.33271 0.89782 1.26114 0.96535 1.00242 0.96717 1.70137 1.17051 1.28004 1.41844 0.85158 0.77482 0.77753 0.78523 1.18549 1.20955 1.18517 0.91930 0.90897 0.90043 0.90313 0.84062 0.91450 0.88349 0.92103 0.75573 0.99587 0.99656 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 9.22 71.98 0.66 -1.28 16 2 C -0.12 -3.25 5.92 -10.80 -0.06 -3.31 16 3 H 0.08 2.72 7.67 -2.39 -0.02 2.70 16 4 C -0.13 -3.21 9.52 30.59 0.29 -2.92 16 5 C -0.17 -5.22 2.62 -52.93 -0.14 -5.36 16 6 C -0.11 -2.31 8.82 71.98 0.63 -1.68 16 7 C 0.52 22.98 7.39 87.66 0.65 23.63 16 8 O -0.61 -32.72 16.26 -3.01 -0.05 -32.77 16 9 N -0.70 -31.88 5.45 -466.79 -2.54 -34.42 16 10 C 0.27 15.26 5.43 85.63 0.46 15.72 16 11 C -0.56 -31.26 9.28 25.60 0.24 -31.02 16 12 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 13 C 0.00 0.20 5.46 84.65 0.46 0.66 16 14 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 15 Si 0.99 42.72 29.54 68.60 2.03 44.75 16 16 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 19 H 0.06 1.09 8.03 -2.39 -0.02 1.07 16 20 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.08 1.03 7.77 -2.39 -0.02 1.01 16 22 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.14 2.28 7.96 -2.39 -0.02 2.26 16 24 H 0.07 1.42 8.03 -2.39 -0.02 1.40 16 25 H 0.10 1.46 7.77 -2.39 -0.02 1.44 16 26 H 0.06 1.37 6.38 -2.39 -0.02 1.36 16 27 H 0.41 15.48 6.62 -92.71 -0.61 14.87 16 28 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 30 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -73.36 258.18 3.43 -69.94 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.51 Total: 15.08 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 3.20 Total: -5.56 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -2.26 Total: -91.43 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.05 Total: -32.77 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.36 3.43 -69.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704357943.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.469 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds