Wall clock time and date at job start Mon Mar 30 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47637 * 2 1 4 4 N 1.46497 * 109.47243 * 120.00696 * 2 1 3 5 5 C 1.34776 * 119.99876 * 274.99567 * 4 2 1 6 6 O 1.21683 * 120.00325 * 0.02562 * 5 4 2 7 7 C 1.46374 * 119.99868 * 179.97438 * 5 4 2 8 8 H 1.08009 * 120.00261 * 359.97438 * 7 5 4 9 9 C 1.40049 * 120.00272 * 180.02562 * 7 5 4 10 10 N 1.30680 * 119.99602 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00521 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47251 * 89.99721 * 11 9 7 13 13 H 1.48496 * 109.47231 * 210.00040 * 11 9 7 14 14 H 1.48503 * 109.47047 * 329.99952 * 11 9 7 15 15 C 1.53004 * 109.46685 * 240.00397 * 2 1 3 16 16 C 1.53006 * 115.55094 * 205.58310 * 15 2 1 17 17 C 1.52998 * 117.50299 * 351.25356 * 15 2 1 18 18 C 1.52999 * 117.50002 * 59.91566 * 15 2 1 19 19 H 1.09003 * 109.46996 * 59.99510 * 1 2 3 20 20 H 1.08995 * 109.47580 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46596 * 299.99860 * 1 2 3 22 22 H 0.97005 * 120.00082 * 94.99842 * 4 2 1 23 23 H 0.96994 * 119.99626 * 180.02562 * 10 9 7 24 24 H 1.09001 * 109.47002 * 34.41649 * 16 15 2 25 25 H 1.08993 * 109.46955 * 154.42086 * 16 15 2 26 26 H 1.09000 * 109.47050 * 274.41915 * 16 15 2 27 27 H 1.08992 * 117.50074 * 215.00275 * 17 15 2 28 28 H 1.09001 * 117.49625 * 0.02664 * 17 15 2 29 29 H 1.09006 * 117.49693 * 359.97438 * 18 15 2 30 30 H 1.08998 * 117.50050 * 144.96785 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3571 6 8 1.8574 1.1621 2.4120 7 6 2.6346 -0.7088 3.5522 8 1 2.8906 -1.7570 3.5039 9 6 2.7679 -0.0104 4.7588 10 7 2.4567 1.2574 4.8178 11 14 3.3906 -0.8911 6.2840 12 1 4.8705 -0.7859 6.3468 13 1 2.7981 -0.2656 7.4934 14 1 2.9982 -2.3221 6.2241 15 6 2.0399 -0.7212 -1.2494 16 6 3.4337 -1.3411 -1.1309 17 6 1.0107 -1.4564 -2.1102 18 6 1.6339 -0.1505 -2.6097 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 2.2490 -1.6319 1.1524 23 1 2.5494 1.7411 5.6533 24 1 3.5843 -1.7051 -0.1145 25 1 3.5228 -2.1715 -1.8312 26 1 4.1871 -0.5881 -1.3624 27 1 1.3266 -2.3816 -2.5921 28 1 -0.0297 -1.4260 -1.7868 29 1 1.0032 0.7385 -2.6145 30 1 2.3599 -0.2163 -3.4200 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706303708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:09 Heat of formation + Delta-G solvation = -22.858660 kcal Electronic energy + Delta-G solvation = -12688.748396 eV Core-core repulsion = 10484.574680 eV Total energy + Delta-G solvation = -2204.173716 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.87184 -36.62786 -33.03419 -32.13419 -29.46795 -28.13120 -25.93898 -23.14490 -22.13346 -19.74698 -18.33418 -17.09783 -15.62341 -15.29561 -14.24607 -14.06533 -13.77943 -12.89786 -12.80631 -12.30812 -12.17487 -12.03529 -11.45324 -11.20578 -11.06612 -11.02353 -10.78072 -10.43086 -10.32837 -10.22461 -9.86471 -9.31645 -8.81673 -7.55668 -7.41651 -6.14462 -4.59838 3.16043 3.22775 3.26187 3.96910 4.14789 4.62901 4.82941 5.01154 5.15743 5.27781 5.38850 5.78824 5.80039 5.93260 5.96892 6.05931 6.11893 6.20953 6.31252 6.34088 6.43051 6.61812 6.74915 6.93665 7.46950 7.99867 8.19376 8.39270 9.06515 9.61428 10.64859 10.84474 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063153 B = 0.008796 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.259917 B = 3182.673151 C = 3382.402947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.188 3.812 3 H 0.077 0.923 4 N -0.758 5.758 5 C 0.556 3.444 6 O -0.581 6.581 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.087 3.913 10 N -0.769 5.769 11 Si 0.906 3.094 12 H -0.272 1.272 13 H -0.280 1.280 14 H -0.265 1.265 15 C -0.129 4.129 16 C -0.114 4.114 17 C -0.181 4.181 18 C -0.175 4.175 19 H 0.047 0.953 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.380 0.620 23 H 0.267 0.733 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -5.656 -9.555 11.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.082 3.918 3 H 0.095 0.905 4 N -0.414 5.414 5 C 0.360 3.640 6 O -0.464 6.464 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.398 5.398 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.190 1.190 15 C -0.129 4.129 16 C -0.172 4.172 17 C -0.218 4.218 18 C -0.213 4.213 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.212 0.788 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.726 -4.599 -9.387 10.478 hybrid contribution 0.377 -0.892 0.663 1.173 sum -0.349 -5.490 -8.724 10.314 Atomic orbital electron populations 1.22279 0.97209 1.00957 1.01315 1.19875 0.92299 0.96434 0.83221 0.90534 1.46215 1.72976 1.12764 1.09397 1.18199 0.77778 0.86381 0.81677 1.90589 1.54821 1.16481 1.84526 1.20894 1.46940 0.97080 0.93411 0.91548 1.25702 0.93359 0.94466 0.99670 1.70028 1.35323 1.08205 1.26207 0.86398 0.79315 0.80231 0.80940 1.19790 1.20504 1.18964 1.21875 0.96088 1.02778 0.92198 1.21320 0.93766 0.99467 1.02620 1.23260 0.99161 0.95469 1.03912 1.22986 1.03713 0.97522 0.97059 0.93409 0.93037 0.91938 0.78790 0.92198 0.90929 0.93219 0.92519 0.89468 0.88242 0.88915 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.19 3.72 2.84 -67.93 -0.19 3.52 16 3 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 4 N -0.76 -17.16 4.34 -55.22 -0.24 -17.40 16 5 C 0.56 15.92 7.71 -12.99 -0.10 15.82 16 6 O -0.58 -18.94 14.68 5.20 0.08 -18.86 16 7 C -0.55 -15.57 9.54 -35.63 -0.34 -15.91 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.32 16 9 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 10 N -0.77 -23.31 11.83 55.55 0.66 -22.65 16 11 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 C -0.13 -2.00 2.50 -154.50 -0.39 -2.38 16 16 C -0.11 -1.68 9.69 37.16 0.36 -1.32 16 17 C -0.18 -2.36 9.22 -26.69 -0.25 -2.61 16 18 C -0.18 -2.30 9.62 -26.69 -0.26 -2.56 16 19 H 0.05 0.74 7.07 -51.93 -0.37 0.38 16 20 H 0.05 0.86 6.97 -51.93 -0.36 0.50 16 21 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 22 H 0.38 7.69 7.17 -40.82 -0.29 7.40 16 23 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 24 H 0.07 1.15 6.03 -51.93 -0.31 0.84 16 25 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 28 H 0.10 1.29 5.85 -51.93 -0.30 0.99 16 29 H 0.09 1.20 7.60 -51.93 -0.39 0.81 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 251.19 15.07 3.79 3.79 Total: -1.00 -33.04 251.19 -5.77 -38.82 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.07 Total: 6.64 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.96 Total: -5.66 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.42 Total: -40.05 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.04 -5.77 -38.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706303708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.957 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds