Wall clock time and date at job start Mon Mar 30 2020 02:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47637 * 2 1 4 4 N 1.46497 * 109.47243 * 120.00696 * 2 1 3 5 5 C 1.34776 * 119.99876 * 274.99567 * 4 2 1 6 6 O 1.21683 * 120.00325 * 0.02562 * 5 4 2 7 7 C 1.46374 * 119.99868 * 179.97438 * 5 4 2 8 8 H 1.08009 * 120.00261 * 359.97438 * 7 5 4 9 9 C 1.40049 * 120.00272 * 180.02562 * 7 5 4 10 10 N 1.30680 * 119.99602 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 120.00521 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47251 * 89.99721 * 11 9 7 13 13 H 1.48496 * 109.47231 * 210.00040 * 11 9 7 14 14 H 1.48503 * 109.47047 * 329.99952 * 11 9 7 15 15 C 1.53004 * 109.46685 * 240.00397 * 2 1 3 16 16 C 1.53006 * 115.55094 * 205.58310 * 15 2 1 17 17 C 1.52998 * 117.50299 * 351.25356 * 15 2 1 18 18 C 1.52999 * 117.50002 * 59.91566 * 15 2 1 19 19 H 1.09003 * 109.46996 * 59.99510 * 1 2 3 20 20 H 1.08995 * 109.47580 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46596 * 299.99860 * 1 2 3 22 22 H 0.97005 * 120.00082 * 94.99842 * 4 2 1 23 23 H 0.96994 * 119.99626 * 180.02562 * 10 9 7 24 24 H 1.09001 * 109.47002 * 34.41649 * 16 15 2 25 25 H 1.08993 * 109.46955 * 154.42086 * 16 15 2 26 26 H 1.09000 * 109.47050 * 274.41915 * 16 15 2 27 27 H 1.08992 * 117.50074 * 215.00275 * 17 15 2 28 28 H 1.09001 * 117.49625 * 0.02664 * 17 15 2 29 29 H 1.09006 * 117.49693 * 359.97438 * 18 15 2 30 30 H 1.08998 * 117.50050 * 144.96785 * 18 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1471 -0.0185 2.3571 6 8 1.8574 1.1621 2.4120 7 6 2.6346 -0.7088 3.5522 8 1 2.8906 -1.7570 3.5039 9 6 2.7679 -0.0104 4.7588 10 7 2.4567 1.2574 4.8178 11 14 3.3906 -0.8911 6.2840 12 1 4.8705 -0.7859 6.3468 13 1 2.7981 -0.2656 7.4934 14 1 2.9982 -2.3221 6.2241 15 6 2.0399 -0.7212 -1.2494 16 6 3.4337 -1.3411 -1.1309 17 6 1.0107 -1.4564 -2.1102 18 6 1.6339 -0.1505 -2.6097 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 2.2490 -1.6319 1.1524 23 1 2.5494 1.7411 5.6533 24 1 3.5843 -1.7051 -0.1145 25 1 3.5228 -2.1715 -1.8312 26 1 4.1871 -0.5881 -1.3624 27 1 1.3266 -2.3816 -2.5921 28 1 -0.0297 -1.4260 -1.7868 29 1 1.0032 0.7385 -2.6145 30 1 2.3599 -0.2163 -3.4200 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706303708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:09 Heat of formation + Delta-G solvation = -45.886025 kcal Electronic energy + Delta-G solvation = -12689.746937 eV Core-core repulsion = 10484.574680 eV Total energy + Delta-G solvation = -2205.172258 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.36354 -38.53475 -34.95680 -34.23697 -31.08820 -29.50380 -27.97488 -24.65912 -23.24710 -21.69972 -19.98428 -18.86747 -17.50241 -16.96240 -16.10268 -15.53653 -15.32109 -14.57802 -14.32640 -14.07873 -13.81357 -13.38033 -13.05784 -12.88984 -12.70125 -12.58364 -12.50908 -12.10163 -12.02012 -11.69650 -11.08838 -10.93110 -10.52255 -9.81285 -9.40448 -8.27604 -6.84170 1.39665 1.41572 1.56638 2.24921 2.49125 2.82239 3.23104 3.63718 3.79592 3.98211 4.06837 4.17167 4.40535 4.60072 4.73551 4.86495 4.92754 4.97866 5.01623 5.14614 5.16819 5.32353 5.33967 5.38121 5.44868 5.90756 6.27134 6.36585 6.87983 7.60343 8.52702 8.70125 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.063153 B = 0.008796 C = 0.008276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.259917 B = 3182.673151 C = 3382.402947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.185 3.815 3 H 0.034 0.966 4 N -0.745 5.745 5 C 0.539 3.461 6 O -0.633 6.633 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.027 3.973 10 N -0.823 5.823 11 Si 0.998 3.002 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.249 1.249 15 C -0.154 4.154 16 C -0.111 4.111 17 C -0.161 4.161 18 C -0.163 4.163 19 H 0.077 0.923 20 H 0.070 0.930 21 H 0.019 0.981 22 H 0.393 0.607 23 H 0.273 0.727 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 -7.952 -10.406 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.079 3.921 3 H 0.052 0.948 4 N -0.399 5.399 5 C 0.343 3.657 6 O -0.521 6.521 7 C -0.611 4.611 8 H 0.104 0.896 9 C -0.188 4.188 10 N -0.453 5.453 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.172 1.172 15 C -0.154 4.154 16 C -0.168 4.168 17 C -0.197 4.197 18 C -0.201 4.201 19 H 0.095 0.905 20 H 0.089 0.911 21 H 0.038 0.962 22 H 0.228 0.772 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.120 0.880 29 H 0.110 0.890 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.437 -6.940 -10.294 12.423 hybrid contribution 0.261 -0.155 0.830 0.884 sum -0.176 -7.095 -9.464 11.830 Atomic orbital electron populations 1.22178 0.96012 1.01919 1.00645 1.19958 0.93236 0.94726 0.84179 0.94762 1.45888 1.71839 1.13185 1.08966 1.18584 0.77551 0.86022 0.83515 1.90542 1.57056 1.18678 1.85777 1.21442 1.47365 0.98188 0.94149 0.89587 1.26989 0.92828 0.95162 1.03773 1.70203 1.36741 1.10604 1.27748 0.85019 0.78856 0.79188 0.75212 1.18603 1.19820 1.17203 1.21679 0.97446 1.05099 0.91215 1.21285 0.93088 1.00191 1.02243 1.23357 0.98348 0.96327 1.01676 1.23106 1.03683 0.97792 0.95476 0.90460 0.91102 0.96197 0.77234 0.91668 0.92875 0.90179 0.93178 0.87047 0.88042 0.88983 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 8.08 71.98 0.58 -4.87 16 2 C 0.18 7.42 2.84 44.99 0.13 7.55 16 3 H 0.03 1.65 7.58 -2.39 -0.02 1.63 16 4 N -0.74 -34.45 4.34 -446.83 -1.94 -36.39 16 5 C 0.54 32.09 7.71 86.36 0.67 32.76 16 6 O -0.63 -43.56 14.68 -4.29 -0.06 -43.63 16 7 C -0.57 -33.28 9.54 24.83 0.24 -33.04 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.03 1.55 5.50 85.30 0.47 2.02 16 10 N -0.82 -51.52 11.83 21.84 0.26 -51.26 16 11 Si 1.00 41.66 29.56 68.60 2.03 43.69 16 12 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 14 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 15 C -0.15 -4.50 2.50 -52.18 -0.13 -4.63 16 16 C -0.11 -3.06 9.69 71.98 0.70 -2.36 16 17 C -0.16 -3.57 9.22 30.62 0.28 -3.29 16 18 C -0.16 -3.79 9.62 30.62 0.29 -3.49 16 19 H 0.08 2.32 7.07 -2.39 -0.02 2.31 16 20 H 0.07 2.28 6.97 -2.39 -0.02 2.26 16 21 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.39 15.92 7.17 -92.70 -0.66 15.26 16 23 H 0.27 15.49 8.29 -92.71 -0.77 14.72 16 24 H 0.05 1.64 6.03 -2.39 -0.01 1.63 16 25 H 0.08 1.70 7.90 -2.39 -0.02 1.68 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 2.01 8.05 -2.39 -0.02 1.99 16 28 H 0.10 2.24 5.85 -2.39 -0.01 2.23 16 29 H 0.09 2.16 7.60 -2.38 -0.02 2.14 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.20 251.19 3.98 -71.22 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.47 Total: 25.72 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 3.23 Total: -9.36 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -1.68 Total: -87.65 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.06 Total: -43.63 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -75.20 3.98 -71.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706303708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.338 kcal (2) G-P(sol) polarization free energy of solvation -75.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds