Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46975 * 2 1 4 4 N 1.46509 * 109.46901 * 240.00363 * 2 1 3 5 5 C 1.34766 * 119.99919 * 85.93046 * 4 2 1 6 6 O 1.21692 * 120.00609 * 0.02562 * 5 4 2 7 7 C 1.46382 * 119.99736 * 179.97438 * 5 4 2 8 8 H 1.07992 * 120.00217 * 359.97438 * 7 5 4 9 9 C 1.40051 * 119.99822 * 180.02562 * 7 5 4 10 10 N 1.30671 * 120.00223 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 119.99999 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46972 * 89.99884 * 11 9 7 13 13 H 1.48499 * 109.47252 * 210.00188 * 11 9 7 14 14 H 1.48498 * 109.46930 * 329.99825 * 11 9 7 15 15 C 1.52992 * 109.46872 * 120.00718 * 2 1 3 16 16 C 1.52998 * 115.55797 * 56.51777 * 15 2 1 17 17 C 1.53007 * 117.51472 * 202.22298 * 15 2 1 18 18 C 1.52997 * 60.00250 * 107.47474 * 17 15 2 19 19 H 1.08998 * 109.47240 * 299.99986 * 1 2 3 20 20 H 1.09001 * 109.46823 * 60.00014 * 1 2 3 21 21 H 1.09001 * 109.47066 * 179.97438 * 1 2 3 22 22 H 0.97000 * 119.99414 * 265.93312 * 4 2 1 23 23 H 0.96996 * 120.00180 * 180.02562 * 10 9 7 24 24 H 1.09001 * 109.46760 * 269.27121 * 16 15 2 25 25 H 1.08997 * 109.47594 * 149.27180 * 16 15 2 26 26 H 1.08996 * 109.46593 * 29.26804 * 16 15 2 27 27 H 1.09000 * 117.49485 * 214.96628 * 17 15 2 28 28 H 1.09002 * 117.49722 * 359.97438 * 17 15 2 29 29 H 1.08995 * 117.50194 * 252.50555 * 18 17 15 30 30 H 1.08999 * 117.49783 * 107.48840 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1963 5 6 2.1648 -0.0138 -2.3524 6 8 1.8920 1.1711 -2.4027 7 6 2.6533 -0.7036 -3.5475 8 1 2.8966 -1.7548 -3.5027 9 6 2.8060 -0.0002 -4.7489 10 7 2.5121 1.2719 -4.8031 11 14 3.4286 -0.8807 -6.2742 12 1 2.2769 -1.4322 -7.0321 13 1 4.1714 0.0783 -7.1308 14 1 4.3326 -1.9881 -5.8721 15 6 2.0400 -0.7214 1.2491 16 6 1.5420 -2.1565 1.4321 17 6 3.4599 -0.4008 1.7203 18 6 2.2565 0.1175 2.5103 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 2.2362 -1.6350 -1.1561 23 1 2.6175 1.7590 -5.6352 24 1 0.6226 -2.1501 2.0175 25 1 2.3005 -2.7406 1.9531 26 1 1.3482 -2.6009 0.4559 27 1 4.0393 -1.2124 2.1606 28 1 4.0312 0.3238 1.1401 29 1 2.0361 1.1832 2.4500 30 1 2.0442 -0.3531 3.4703 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706303710.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -53.150708 kcal Electronic energy + Delta-G solvation = -12667.887125 eV Core-core repulsion = 10462.399847 eV Total energy + Delta-G solvation = -2205.487278 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.22818 -38.46728 -35.02709 -34.31079 -31.18223 -29.16894 -28.17139 -24.63947 -23.21268 -21.69983 -20.06487 -18.91869 -17.48456 -16.83189 -16.12003 -15.47585 -15.22068 -14.82130 -14.33577 -14.01770 -13.58635 -13.28646 -13.09115 -13.06296 -12.73488 -12.60424 -12.54360 -12.29626 -12.02241 -11.59183 -11.13031 -10.92895 -10.61635 -9.81404 -9.40933 -8.27846 -6.84440 1.39301 1.41307 1.56364 2.24466 2.48668 2.74862 3.31546 3.63913 3.72958 3.91557 4.13970 4.14568 4.44291 4.60874 4.78187 4.80649 4.93512 5.02921 5.03470 5.12434 5.13515 5.28264 5.30040 5.32248 5.52552 5.90733 6.27044 6.36428 6.87634 7.60490 8.52410 8.69793 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056585 B = 0.008866 C = 0.008560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.712223 B = 3157.498605 C = 3270.365141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.185 3.815 3 H 0.032 0.968 4 N -0.745 5.745 5 C 0.539 3.461 6 O -0.634 6.634 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.027 3.973 10 N -0.823 5.823 11 Si 0.998 3.002 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.249 1.249 15 C -0.141 4.141 16 C -0.106 4.106 17 C -0.176 4.176 18 C -0.153 4.153 19 H 0.075 0.925 20 H 0.018 0.982 21 H 0.069 0.931 22 H 0.392 0.608 23 H 0.273 0.727 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -8.010 10.496 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.079 3.921 3 H 0.050 0.950 4 N -0.399 5.399 5 C 0.343 3.657 6 O -0.521 6.521 7 C -0.611 4.611 8 H 0.104 0.896 9 C -0.188 4.188 10 N -0.453 5.453 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.172 1.172 15 C -0.141 4.141 16 C -0.163 4.163 17 C -0.213 4.213 18 C -0.190 4.190 19 H 0.094 0.906 20 H 0.037 0.963 21 H 0.088 0.912 22 H 0.226 0.774 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.313 -6.991 10.390 12.527 hybrid contribution 0.307 -0.108 -0.886 0.943 sum -0.006 -7.098 9.504 11.863 Atomic orbital electron populations 1.22024 0.95727 1.02068 1.00527 1.20053 0.93560 0.94396 0.84071 0.94998 1.45824 1.72004 1.12754 1.09269 1.18586 0.77469 0.86076 0.83548 1.90543 1.57502 1.18377 1.85720 1.21442 1.47417 0.97831 0.94459 0.89608 1.26994 0.92866 0.95160 1.03757 1.70198 1.36925 1.10338 1.27838 0.85018 0.79003 0.78519 0.75722 1.18576 1.19815 1.17201 1.21678 1.00060 0.98011 0.94395 1.21296 1.01732 0.91334 1.01957 1.23068 0.90811 1.03811 1.03644 1.23081 1.01203 0.99486 0.95254 0.90578 0.96296 0.91229 0.77421 0.91668 0.90787 0.90794 0.92814 0.86690 0.91626 0.89672 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.27 71.98 0.67 -4.66 16 2 C 0.18 7.41 2.42 44.99 0.11 7.52 16 3 H 0.03 1.53 7.51 -2.39 -0.02 1.52 16 4 N -0.75 -34.59 4.99 -446.82 -2.23 -36.82 16 5 C 0.54 32.22 7.72 86.36 0.67 32.89 16 6 O -0.63 -43.75 14.67 -4.32 -0.06 -43.81 16 7 C -0.57 -33.42 9.54 24.83 0.24 -33.18 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.03 1.54 5.50 85.31 0.47 2.01 16 10 N -0.82 -51.65 11.83 21.84 0.26 -51.39 16 11 Si 1.00 41.78 29.56 68.60 2.03 43.81 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 14 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 15 C -0.14 -4.09 1.79 -52.18 -0.09 -4.18 16 16 C -0.11 -2.42 8.79 71.98 0.63 -1.78 16 17 C -0.18 -4.88 9.90 30.60 0.30 -4.58 16 18 C -0.15 -3.69 9.95 30.60 0.30 -3.39 16 19 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 20 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 21 H 0.07 2.24 7.45 -2.39 -0.02 2.22 16 22 H 0.39 15.93 7.50 -92.71 -0.69 15.23 16 23 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.39 7.87 -2.39 -0.02 1.37 16 26 H 0.05 1.33 6.95 -2.39 -0.02 1.31 16 27 H 0.11 2.58 8.03 -2.39 -0.02 2.56 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -75.78 257.55 3.72 -72.07 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.43 Total: 25.50 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 3.30 Total: -9.35 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.97 Total: -88.21 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.06 Total: -43.81 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -75.78 3.72 -72.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706303710.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.917 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds