Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.13387 * 2 1 4 4 C 1.52745 * 109.10176 * 119.47997 * 2 1 3 5 5 H 1.09010 * 109.39651 * 189.57858 * 4 2 1 6 6 C 1.50693 * 109.79699 * 309.89405 * 4 2 1 7 7 H 1.07998 * 120.00112 * 4.65606 * 6 4 2 8 8 C 1.37876 * 120.00302 * 184.64660 * 6 4 2 9 9 N 1.31518 * 119.99649 * 7.14728 * 8 6 4 10 10 Si 1.86799 * 120.00261 * 187.14140 * 8 6 4 11 11 H 1.48505 * 109.47161 * 94.94913 * 10 8 6 12 12 H 1.48503 * 109.47104 * 214.94854 * 10 8 6 13 13 H 1.48501 * 109.47143 * 334.94802 * 10 8 6 14 14 C 1.53340 * 108.82213 * 69.86052 * 4 2 1 15 15 C 1.53069 * 108.43076 * 67.36792 * 14 4 2 16 16 C 1.50180 * 109.89057 * 311.10545 * 15 14 4 17 17 O 1.21279 * 118.24510 * 197.60612 * 16 15 14 18 18 N 1.33360 * 123.50626 * 17.57238 * 16 15 14 19 19 C 1.46499 * 117.94329 * 177.77920 * 18 16 15 20 20 H 1.08999 * 109.47160 * 179.48678 * 1 2 3 21 21 H 1.09007 * 109.47043 * 299.48173 * 1 2 3 22 22 H 1.08998 * 109.47290 * 59.48301 * 1 2 3 23 23 H 0.97002 * 119.99848 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.67330 * 307.63548 * 14 4 2 25 25 H 1.09003 * 109.67957 * 187.10572 * 14 4 2 26 26 H 1.09000 * 109.40583 * 190.97411 * 15 14 4 27 27 H 1.08998 * 109.33205 * 71.18669 * 15 14 4 28 28 H 1.09001 * 109.47489 * 0.02562 * 19 18 16 29 29 H 1.09006 * 109.47090 * 240.00550 * 19 18 16 30 30 H 1.08997 * 109.46880 * 120.00500 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 6 2.0298 -0.7103 1.2565 5 1 3.1063 -0.5664 1.3496 6 6 1.3375 -0.1471 2.4707 7 1 0.5560 0.5891 2.3539 8 6 1.7016 -0.5718 3.7309 9 7 2.7437 -1.3595 3.8838 10 14 0.7151 -0.0282 5.2211 11 1 -0.2969 -1.0642 5.5496 12 1 1.6274 0.1571 6.3780 13 1 0.0303 1.2548 4.9203 14 6 1.7195 -2.2071 1.1352 15 6 2.5789 -2.7899 0.0106 16 6 2.4670 -1.9304 -1.2158 17 8 2.8083 -2.4016 -2.2800 18 7 2.0117 -0.6771 -1.1974 19 6 2.0006 0.0679 -2.4588 20 1 -0.3633 -1.0276 -0.0092 21 1 -0.3633 0.5058 0.8947 22 1 -0.3634 0.5218 -0.8853 23 1 3.0001 -1.6579 4.7704 24 1 0.6642 -2.3451 0.8997 25 1 1.9549 -2.7080 2.0742 26 1 2.2364 -3.7983 -0.2214 27 1 3.6194 -2.8263 0.3335 28 1 2.3905 -0.5636 -3.2572 29 1 2.6238 0.9569 -2.3612 30 1 0.9791 0.3645 -2.6966 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709915947.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = -46.021830 kcal Electronic energy + Delta-G solvation = -13174.644270 eV Core-core repulsion = 10969.466124 eV Total energy + Delta-G solvation = -2205.178147 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.85437 -36.42966 -33.84009 -31.91520 -30.47737 -26.97229 -26.12837 -24.11865 -22.36720 -20.78208 -17.19420 -16.42378 -15.80906 -15.71332 -14.87754 -14.51808 -13.66979 -13.30932 -12.84730 -12.64021 -12.08048 -11.95705 -11.54161 -11.42530 -11.09677 -10.98783 -10.76351 -10.59539 -10.24957 -9.67910 -9.61766 -8.97099 -8.79821 -8.45328 -8.05794 -6.13889 -4.17578 3.24026 3.28975 3.32408 3.33628 3.72735 4.35271 5.18917 5.32426 5.66676 5.76248 5.83964 5.86077 6.01951 6.16882 6.17495 6.22058 6.39765 6.43364 6.65235 6.83529 6.94773 6.99975 7.27055 7.54958 7.74987 7.84294 8.05100 8.30746 8.80038 8.86518 9.47060 10.95188 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054152 B = 0.011616 C = 0.010233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.940887 B = 2409.831202 C = 2735.605574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.141 3.859 3 H 0.069 0.931 4 C 0.043 3.957 5 H 0.039 0.961 6 C -0.515 4.515 7 H 0.065 0.935 8 C 0.065 3.935 9 N -0.885 5.885 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.111 4.111 15 C -0.134 4.134 16 C 0.521 3.479 17 O -0.586 6.586 18 N -0.598 5.598 19 C 0.070 3.930 20 H 0.053 0.947 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.262 0.738 24 H 0.045 0.955 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 1.894 -4.962 6.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.038 3.962 3 H 0.087 0.913 4 C 0.024 3.976 5 H 0.057 0.943 6 C -0.553 4.553 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.523 5.523 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.150 4.150 15 C -0.174 4.174 16 C 0.311 3.689 17 O -0.468 6.468 18 N -0.329 5.329 19 C -0.073 4.073 20 H 0.072 0.928 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.527 1.566 -5.338 6.110 hybrid contribution -0.503 0.317 0.937 1.110 sum -3.030 1.884 -4.400 5.665 Atomic orbital electron populations 1.22199 0.95984 1.01893 1.01009 1.21221 0.94022 0.96213 0.84694 0.91292 1.18931 0.97710 0.91035 0.89940 0.94270 1.21085 1.20020 1.24334 0.89907 0.91729 1.24957 0.94675 0.95169 0.98919 1.69954 1.24473 1.34780 1.23101 0.86598 0.80044 0.79008 0.82486 1.20664 1.21290 1.19808 1.21767 0.96751 0.99338 0.97098 1.21703 1.03520 0.98190 0.93955 1.20451 0.75461 0.81922 0.91024 1.90583 1.51741 1.72281 1.32235 1.47478 1.62315 1.13198 1.09958 1.21658 1.01033 0.96525 0.88131 0.92814 0.90145 0.94856 0.92825 0.93602 0.89394 0.90100 0.89034 0.89764 0.92848 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.81 37.15 0.33 -2.40 16 2 C 0.14 2.76 2.76 -68.47 -0.19 2.57 16 3 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 4 C 0.04 0.98 1.80 -91.73 -0.17 0.81 16 5 H 0.04 1.01 8.10 -51.92 -0.42 0.58 16 6 C -0.52 -12.75 7.86 -34.44 -0.27 -13.02 16 7 H 0.06 1.55 5.88 -52.49 -0.31 1.24 16 8 C 0.07 1.68 5.19 -17.82 -0.09 1.58 16 9 N -0.89 -23.83 12.06 55.43 0.67 -23.16 16 10 Si 0.89 19.97 29.54 -169.99 -5.02 14.94 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 14 C -0.11 -2.43 5.16 -26.52 -0.14 -2.57 16 15 C -0.13 -2.68 6.03 -28.10 -0.17 -2.85 16 16 C 0.52 10.91 7.47 -11.87 -0.09 10.83 16 17 O -0.59 -13.42 15.95 5.56 0.09 -13.33 16 18 N -0.60 -11.49 2.83 -175.27 -0.50 -11.98 16 19 C 0.07 1.11 10.35 59.85 0.62 1.73 16 20 H 0.05 0.99 6.56 -51.93 -0.34 0.65 16 21 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 22 H 0.03 0.51 7.61 -51.93 -0.40 0.12 16 23 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 24 H 0.05 0.97 6.41 -51.93 -0.33 0.63 16 25 H 0.09 2.12 6.69 -51.93 -0.35 1.77 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.08 1.41 6.59 -51.93 -0.34 1.07 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.75 7.62 -51.93 -0.40 0.35 16 LS Contribution 239.38 15.07 3.61 3.61 Total: -1.00 -27.81 239.38 -5.33 -33.14 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -4.02 Total: 0.09 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -0.17 Total: -3.31 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.17 Total: -35.15 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.33 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.81 -5.33 -33.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709915947.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.877 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds