Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.13387 * 2 1 4 4 C 1.52745 * 109.10176 * 119.47997 * 2 1 3 5 5 H 1.09010 * 109.39651 * 189.57858 * 4 2 1 6 6 C 1.50693 * 109.79699 * 309.89405 * 4 2 1 7 7 H 1.07998 * 120.00112 * 4.65606 * 6 4 2 8 8 C 1.37876 * 120.00302 * 184.64660 * 6 4 2 9 9 N 1.31518 * 119.99649 * 7.14728 * 8 6 4 10 10 Si 1.86799 * 120.00261 * 187.14140 * 8 6 4 11 11 H 1.48505 * 109.47161 * 94.94913 * 10 8 6 12 12 H 1.48503 * 109.47104 * 214.94854 * 10 8 6 13 13 H 1.48501 * 109.47143 * 334.94802 * 10 8 6 14 14 C 1.53340 * 108.82213 * 69.86052 * 4 2 1 15 15 C 1.53069 * 108.43076 * 67.36792 * 14 4 2 16 16 C 1.50180 * 109.89057 * 311.10545 * 15 14 4 17 17 O 1.21279 * 118.24510 * 197.60612 * 16 15 14 18 18 N 1.33360 * 123.50626 * 17.57238 * 16 15 14 19 19 C 1.46499 * 117.94329 * 177.77920 * 18 16 15 20 20 H 1.08999 * 109.47160 * 179.48678 * 1 2 3 21 21 H 1.09007 * 109.47043 * 299.48173 * 1 2 3 22 22 H 1.08998 * 109.47290 * 59.48301 * 1 2 3 23 23 H 0.97002 * 119.99848 * 179.97438 * 9 8 6 24 24 H 1.09004 * 109.67330 * 307.63548 * 14 4 2 25 25 H 1.09003 * 109.67957 * 187.10572 * 14 4 2 26 26 H 1.09000 * 109.40583 * 190.97411 * 15 14 4 27 27 H 1.08998 * 109.33205 * 71.18669 * 15 14 4 28 28 H 1.09001 * 109.47489 * 0.02562 * 19 18 16 29 29 H 1.09006 * 109.47090 * 240.00550 * 19 18 16 30 30 H 1.08997 * 109.46880 * 120.00500 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8872 1.0298 0.0000 4 6 2.0298 -0.7103 1.2565 5 1 3.1063 -0.5664 1.3496 6 6 1.3375 -0.1471 2.4707 7 1 0.5560 0.5891 2.3539 8 6 1.7016 -0.5718 3.7309 9 7 2.7437 -1.3595 3.8838 10 14 0.7151 -0.0282 5.2211 11 1 -0.2969 -1.0642 5.5496 12 1 1.6274 0.1571 6.3780 13 1 0.0303 1.2548 4.9203 14 6 1.7195 -2.2071 1.1352 15 6 2.5789 -2.7899 0.0106 16 6 2.4670 -1.9304 -1.2158 17 8 2.8083 -2.4016 -2.2800 18 7 2.0117 -0.6771 -1.1974 19 6 2.0006 0.0679 -2.4588 20 1 -0.3633 -1.0276 -0.0092 21 1 -0.3633 0.5058 0.8947 22 1 -0.3634 0.5218 -0.8853 23 1 3.0001 -1.6579 4.7704 24 1 0.6642 -2.3451 0.8997 25 1 1.9549 -2.7080 2.0742 26 1 2.2364 -3.7983 -0.2214 27 1 3.6194 -2.8263 0.3335 28 1 2.3905 -0.5636 -3.2572 29 1 2.6238 0.9569 -2.3612 30 1 0.9791 0.3645 -2.6966 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709915947.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = -62.525280 kcal Electronic energy + Delta-G solvation = -13175.359913 eV Core-core repulsion = 10969.466124 eV Total energy + Delta-G solvation = -2205.893790 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.47599 -38.13068 -35.52563 -33.73835 -32.09499 -28.66406 -27.56619 -25.92972 -23.97983 -22.49762 -18.88892 -18.23735 -17.45909 -17.33830 -16.49892 -16.29046 -15.27435 -14.90608 -14.48363 -14.37545 -13.56035 -13.45529 -13.19790 -12.97589 -12.77838 -12.65609 -12.44030 -12.29418 -11.98887 -11.40644 -11.35577 -10.80469 -10.51632 -10.36653 -9.59730 -8.09264 -6.17555 1.46982 1.50191 1.57950 1.64867 2.20715 2.49763 3.23381 3.75574 4.12549 4.21300 4.31415 4.48451 4.54823 4.68486 4.72204 4.76457 4.92500 5.00543 5.09181 5.15840 5.26886 5.45054 5.63134 5.72278 5.90278 5.96043 6.25642 6.58809 6.92582 7.20430 7.50133 8.99813 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054152 B = 0.011616 C = 0.010233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.940887 B = 2409.831202 C = 2735.605574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.145 3.855 3 H 0.078 0.922 4 C 0.040 3.960 5 H 0.003 0.997 6 C -0.520 4.520 7 H 0.074 0.926 8 C 0.017 3.983 9 N -0.918 5.918 10 Si 0.949 3.051 11 H -0.279 1.279 12 H -0.292 1.292 13 H -0.263 1.263 14 C -0.101 4.101 15 C -0.129 4.129 16 C 0.516 3.484 17 O -0.609 6.609 18 N -0.597 5.597 19 C 0.067 3.933 20 H 0.045 0.955 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.260 0.740 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 2.902 -5.559 7.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.043 3.957 3 H 0.097 0.903 4 C 0.021 3.979 5 H 0.021 0.979 6 C -0.558 4.558 7 H 0.092 0.908 8 C -0.183 4.183 9 N -0.557 5.557 10 Si 0.776 3.224 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.187 1.187 14 C -0.139 4.139 15 C -0.169 4.169 16 C 0.306 3.694 17 O -0.493 6.493 18 N -0.327 5.327 19 C -0.076 4.076 20 H 0.065 0.935 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.850 2.606 -5.944 7.546 hybrid contribution -0.073 0.035 1.097 1.100 sum -3.923 2.641 -4.847 6.772 Atomic orbital electron populations 1.22103 0.94135 1.01807 1.02215 1.21102 0.95330 0.95950 0.83322 0.90345 1.18857 0.95463 0.92137 0.91476 0.97912 1.21459 1.19814 1.23985 0.90530 0.90786 1.25678 0.95484 0.95491 1.01601 1.70081 1.26020 1.36259 1.23386 0.85669 0.78573 0.78934 0.79235 1.20530 1.21871 1.18677 1.21568 0.97380 0.98536 0.96459 1.21641 1.02952 0.99077 0.93215 1.20478 0.75616 0.82604 0.90678 1.90574 1.53005 1.72897 1.32807 1.47528 1.61353 1.12814 1.11035 1.21866 1.03054 0.96551 0.86085 0.93546 0.90573 0.91942 0.93130 0.92890 0.92081 0.88400 0.89500 0.90698 0.90903 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 8.81 71.98 0.63 -4.10 16 2 C 0.15 5.40 2.76 45.05 0.12 5.52 16 3 H 0.08 2.78 8.10 -2.39 -0.02 2.76 16 4 C 0.04 1.80 1.80 -11.51 -0.02 1.78 16 5 H 0.00 0.14 8.10 -2.38 -0.02 0.12 16 6 C -0.52 -25.34 7.86 25.60 0.20 -25.14 16 7 H 0.07 3.41 5.88 -2.91 -0.02 3.39 16 8 C 0.02 0.85 5.19 84.65 0.44 1.29 16 9 N -0.92 -50.21 12.06 21.45 0.26 -49.96 16 10 Si 0.95 40.59 29.54 68.60 2.03 42.62 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 14 C -0.10 -4.41 5.16 30.73 0.16 -4.25 16 15 C -0.13 -5.13 6.03 29.71 0.18 -4.95 16 16 C 0.52 21.04 7.47 87.71 0.66 21.69 16 17 O -0.61 -27.20 15.95 -3.03 -0.05 -27.25 16 18 N -0.60 -21.72 2.83 -827.62 -2.34 -24.06 16 19 C 0.07 1.92 10.35 127.77 1.32 3.25 16 20 H 0.05 1.58 6.56 -2.39 -0.02 1.56 16 21 H 0.08 2.57 5.95 -2.38 -0.01 2.55 16 22 H 0.06 1.68 7.61 -2.39 -0.02 1.66 16 23 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 24 H 0.05 2.19 6.41 -2.39 -0.02 2.18 16 25 H 0.06 2.99 6.69 -2.39 -0.02 2.98 16 26 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.07 2.34 6.59 -2.39 -0.02 2.33 16 29 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.08 1.89 7.62 -2.39 -0.02 1.87 16 Total: -1.00 -58.20 239.38 4.72 -53.48 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.12 Total: 10.07 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 3.69 Total: -4.90 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -2.08 Total: -74.01 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -58.20 4.72 -53.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709915947.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.042 kcal (2) G-P(sol) polarization free energy of solvation -58.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds