Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09008 * 109.12631 * 2 1 4 4 C 1.52913 * 109.30085 * 119.47602 * 2 1 3 5 5 H 1.09003 * 109.73530 * 51.23419 * 4 2 1 6 6 C 1.50700 * 109.60995 * 290.82566 * 4 2 1 7 7 H 1.07998 * 119.99631 * 0.81414 * 6 4 2 8 8 C 1.37871 * 120.00232 * 180.81300 * 6 4 2 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00314 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47175 * 89.99425 * 10 8 6 12 12 H 1.48496 * 109.47533 * 210.00268 * 10 8 6 13 13 H 1.48500 * 109.46797 * 330.00083 * 10 8 6 14 14 C 1.53346 * 108.67518 * 171.06667 * 4 2 1 15 15 C 1.53070 * 108.42327 * 292.47483 * 14 4 2 16 16 C 1.50177 * 109.89444 * 48.89994 * 15 14 4 17 17 O 1.21283 * 118.24537 * 162.41448 * 16 15 14 18 18 N 1.33356 * 123.50508 * 342.69838 * 16 15 14 19 19 C 1.46498 * 117.94576 * 181.92076 * 18 16 15 20 20 H 1.08993 * 109.47110 * 300.51702 * 1 2 3 21 21 H 1.08996 * 109.46699 * 60.51725 * 1 2 3 22 22 H 1.08993 * 109.46608 * 180.51796 * 1 2 3 23 23 H 0.97000 * 119.99932 * 179.97438 * 9 8 6 24 24 H 1.09001 * 109.67916 * 172.73998 * 14 4 2 25 25 H 1.08997 * 109.67211 * 52.20291 * 14 4 2 26 26 H 1.09000 * 109.40191 * 288.76368 * 15 14 4 27 27 H 1.09005 * 109.40251 * 169.02779 * 15 14 4 28 28 H 1.09010 * 109.46821 * 359.97438 * 19 18 16 29 29 H 1.09004 * 109.47014 * 119.99560 * 19 18 16 30 30 H 1.08993 * 109.46992 * 239.99939 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8873 1.0299 0.0000 4 6 2.0355 -0.7101 1.2564 5 1 1.5509 -1.6820 1.3500 6 6 1.7263 0.1280 2.4701 7 1 1.2073 1.0685 2.3588 8 6 2.1060 -0.3059 3.7224 9 7 2.7385 -1.4510 3.8579 10 14 1.7222 0.7327 5.2269 11 1 0.3941 0.3476 5.7685 12 1 2.7630 0.5083 6.2621 13 1 1.7041 2.1679 4.8461 14 6 3.5522 -0.9011 1.1359 15 6 3.8259 -1.9006 0.0093 16 6 3.0501 -1.5135 -1.2169 17 8 3.3858 -1.9872 -2.2818 18 7 2.0152 -0.6727 -1.1983 19 6 1.3186 -0.4132 -2.4607 20 1 -0.3633 0.5218 0.8853 21 1 -0.3632 0.5058 -0.8946 22 1 -0.3632 -1.0276 0.0093 23 1 3.0059 -1.7561 4.7390 24 1 3.9492 -1.2883 2.0743 25 1 4.0248 0.0530 0.9028 26 1 3.5242 -2.8980 0.3289 27 1 4.8912 -1.9028 -0.2220 28 1 1.7897 -0.9856 -3.2599 29 1 0.2742 -0.7109 -2.3671 30 1 1.3740 0.6499 -2.6943 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709915949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = -48.091938 kcal Electronic energy + Delta-G solvation = -13132.928595 eV Core-core repulsion = 10927.660682 eV Total energy + Delta-G solvation = -2205.267913 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.80490 -36.34750 -33.94262 -31.88677 -30.56938 -26.95579 -26.37381 -24.09200 -21.55185 -20.85439 -17.70539 -16.81033 -15.85194 -15.29915 -14.82910 -14.50504 -13.70623 -13.21842 -12.78822 -12.44566 -12.23981 -11.80164 -11.54925 -11.39989 -11.22121 -10.93009 -10.76538 -10.58528 -10.28346 -9.83579 -9.60016 -9.03346 -8.79557 -8.43759 -8.03775 -6.11735 -4.19281 3.23850 3.30666 3.31695 3.33554 3.73959 4.34635 5.18293 5.34987 5.68929 5.70547 5.84536 5.85586 6.01392 6.10666 6.16810 6.19788 6.42572 6.48110 6.68134 6.77042 6.95167 7.03391 7.26301 7.57746 7.77885 7.89753 8.07750 8.31491 8.80038 8.85901 9.46125 10.94269 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051404 B = 0.011760 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.575860 B = 2380.332540 C = 2803.077047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.140 3.860 3 H 0.062 0.938 4 C 0.044 3.956 5 H 0.035 0.965 6 C -0.512 4.512 7 H 0.060 0.940 8 C 0.064 3.936 9 N -0.887 5.887 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C -0.119 4.119 15 C -0.133 4.133 16 C 0.520 3.480 17 O -0.587 6.587 18 N -0.599 5.599 19 C 0.069 3.931 20 H 0.077 0.923 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.262 0.738 24 H 0.106 0.894 25 H 0.039 0.961 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 2.419 -4.811 5.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.038 3.962 3 H 0.080 0.920 4 C 0.026 3.974 5 H 0.053 0.947 6 C -0.551 4.551 7 H 0.078 0.922 8 C -0.138 4.138 9 N -0.525 5.525 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C -0.157 4.157 15 C -0.173 4.173 16 C 0.310 3.690 17 O -0.469 6.469 18 N -0.331 5.331 19 C -0.075 4.075 20 H 0.095 0.905 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.124 0.876 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.019 2.075 -5.184 5.937 hybrid contribution -0.261 0.561 0.924 1.111 sum -2.279 2.635 -4.260 5.503 Atomic orbital electron populations 1.22054 0.95476 1.01809 1.01394 1.21323 0.93949 0.96173 0.84730 0.91955 1.18994 0.92133 0.96486 0.89833 0.94651 1.20995 1.37603 1.05932 0.90523 0.92201 1.24939 0.94863 0.95038 0.98962 1.69857 1.39139 1.20055 1.23475 0.86563 0.78063 0.80654 0.82556 1.20664 1.21201 1.19859 1.21817 0.99844 0.95958 0.98045 1.21704 0.99237 1.02415 0.93894 1.20512 0.79986 0.77348 0.91127 1.90581 1.68609 1.55476 1.32230 1.47497 1.30964 1.44898 1.09712 1.21659 0.97041 1.00784 0.87980 0.90456 0.93954 0.92944 0.92765 0.87598 0.94183 0.89157 0.90107 0.89863 0.92556 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.33 37.16 0.31 -2.28 16 2 C 0.14 2.77 2.73 -68.39 -0.19 2.59 16 3 H 0.06 1.24 8.11 -51.92 -0.42 0.82 16 4 C 0.04 1.02 1.60 -91.64 -0.15 0.88 16 5 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 6 C -0.51 -12.79 7.90 -34.44 -0.27 -13.07 16 7 H 0.06 1.46 7.32 -52.49 -0.38 1.07 16 8 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 9 N -0.89 -23.71 11.31 55.43 0.63 -23.08 16 10 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 C -0.12 -2.65 5.17 -26.52 -0.14 -2.79 16 15 C -0.13 -2.70 6.03 -28.10 -0.17 -2.87 16 16 C 0.52 11.02 7.47 -11.87 -0.09 10.93 16 17 O -0.59 -13.54 15.95 5.55 0.09 -13.45 16 18 N -0.60 -11.63 3.11 -175.18 -0.54 -12.17 16 19 C 0.07 1.10 9.50 59.85 0.57 1.67 16 20 H 0.08 1.37 7.23 -51.93 -0.38 0.99 16 21 H 0.04 0.62 6.82 -51.93 -0.35 0.26 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 24 H 0.11 2.62 5.95 -51.93 -0.31 2.31 16 25 H 0.04 0.88 8.13 -51.93 -0.42 0.45 16 26 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 27 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 28 H 0.08 1.41 6.59 -51.92 -0.34 1.07 16 29 H 0.06 0.81 6.86 -51.93 -0.36 0.45 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 241.23 15.07 3.64 3.64 Total: -1.00 -27.80 241.23 -5.64 -33.44 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.21 Total: 0.02 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.22 Total: -3.39 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.08 Total: -35.25 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.80 -5.64 -33.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709915949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.648 kcal (2) G-P(sol) polarization free energy of solvation -27.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds