Wall clock time and date at job start Mon Mar 30 2020 02:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09008 * 109.12631 * 2 1 4 4 C 1.52913 * 109.30085 * 119.47602 * 2 1 3 5 5 H 1.09003 * 109.73530 * 51.23419 * 4 2 1 6 6 C 1.50700 * 109.60995 * 290.82566 * 4 2 1 7 7 H 1.07998 * 119.99631 * 0.81414 * 6 4 2 8 8 C 1.37871 * 120.00232 * 180.81300 * 6 4 2 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 4 10 10 Si 1.86802 * 120.00314 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47175 * 89.99425 * 10 8 6 12 12 H 1.48496 * 109.47533 * 210.00268 * 10 8 6 13 13 H 1.48500 * 109.46797 * 330.00083 * 10 8 6 14 14 C 1.53346 * 108.67518 * 171.06667 * 4 2 1 15 15 C 1.53070 * 108.42327 * 292.47483 * 14 4 2 16 16 C 1.50177 * 109.89444 * 48.89994 * 15 14 4 17 17 O 1.21283 * 118.24537 * 162.41448 * 16 15 14 18 18 N 1.33356 * 123.50508 * 342.69838 * 16 15 14 19 19 C 1.46498 * 117.94576 * 181.92076 * 18 16 15 20 20 H 1.08993 * 109.47110 * 300.51702 * 1 2 3 21 21 H 1.08996 * 109.46699 * 60.51725 * 1 2 3 22 22 H 1.08993 * 109.46608 * 180.51796 * 1 2 3 23 23 H 0.97000 * 119.99932 * 179.97438 * 9 8 6 24 24 H 1.09001 * 109.67916 * 172.73998 * 14 4 2 25 25 H 1.08997 * 109.67211 * 52.20291 * 14 4 2 26 26 H 1.09000 * 109.40191 * 288.76368 * 15 14 4 27 27 H 1.09005 * 109.40251 * 169.02779 * 15 14 4 28 28 H 1.09010 * 109.46821 * 359.97438 * 19 18 16 29 29 H 1.09004 * 109.47014 * 119.99560 * 19 18 16 30 30 H 1.08993 * 109.46992 * 239.99939 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8873 1.0299 0.0000 4 6 2.0355 -0.7101 1.2564 5 1 1.5509 -1.6820 1.3500 6 6 1.7263 0.1280 2.4701 7 1 1.2073 1.0685 2.3588 8 6 2.1060 -0.3059 3.7224 9 7 2.7385 -1.4510 3.8579 10 14 1.7222 0.7327 5.2269 11 1 0.3941 0.3476 5.7685 12 1 2.7630 0.5083 6.2621 13 1 1.7041 2.1679 4.8461 14 6 3.5522 -0.9011 1.1359 15 6 3.8259 -1.9006 0.0093 16 6 3.0501 -1.5135 -1.2169 17 8 3.3858 -1.9872 -2.2818 18 7 2.0152 -0.6727 -1.1983 19 6 1.3186 -0.4132 -2.4607 20 1 -0.3633 0.5218 0.8853 21 1 -0.3632 0.5058 -0.8946 22 1 -0.3632 -1.0276 0.0093 23 1 3.0059 -1.7561 4.7390 24 1 3.9492 -1.2883 2.0743 25 1 4.0248 0.0530 0.9028 26 1 3.5242 -2.8980 0.3289 27 1 4.8912 -1.9028 -0.2220 28 1 1.7897 -0.9856 -3.2599 29 1 0.2742 -0.7109 -2.3671 30 1 1.3740 0.6499 -2.6943 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709915949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:00 Heat of formation + Delta-G solvation = -64.658439 kcal Electronic energy + Delta-G solvation = -13133.646972 eV Core-core repulsion = 10927.660682 eV Total energy + Delta-G solvation = -2205.986290 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.43962 -38.05548 -35.65352 -33.71772 -32.18354 -28.67935 -27.79088 -25.92087 -23.13509 -22.60922 -19.37899 -18.65047 -17.50293 -16.95606 -16.52917 -16.24768 -15.28962 -14.91221 -14.47676 -13.92439 -13.87266 -13.27464 -13.10135 -13.00542 -12.92622 -12.67420 -12.46709 -12.21729 -12.03829 -11.62622 -11.32194 -10.88676 -10.55516 -10.33276 -9.59249 -8.06957 -6.19928 1.46873 1.49614 1.57661 1.64658 2.20612 2.49013 3.22059 3.76776 4.14190 4.19066 4.33418 4.44856 4.53754 4.64026 4.68972 4.77322 4.91155 5.01691 5.10798 5.16390 5.30177 5.40303 5.60516 5.70996 5.89605 6.01671 6.26876 6.57616 6.89148 7.20139 7.48393 8.98264 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051404 B = 0.011760 C = 0.009987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.575860 B = 2380.332540 C = 2803.077047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.145 3.855 3 H 0.067 0.933 4 C 0.042 3.958 5 H 0.005 0.995 6 C -0.520 4.520 7 H 0.066 0.934 8 C 0.017 3.983 9 N -0.915 5.915 10 Si 0.953 3.047 11 H -0.279 1.279 12 H -0.290 1.290 13 H -0.266 1.266 14 C -0.111 4.111 15 C -0.127 4.127 16 C 0.514 3.486 17 O -0.609 6.609 18 N -0.598 5.598 19 C 0.065 3.935 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.261 0.739 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 3.662 -5.349 7.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.043 3.957 3 H 0.085 0.915 4 C 0.023 3.977 5 H 0.023 0.977 6 C -0.559 4.559 7 H 0.084 0.916 8 C -0.183 4.183 9 N -0.555 5.555 10 Si 0.779 3.221 11 H -0.205 1.205 12 H -0.216 1.216 13 H -0.190 1.190 14 C -0.150 4.150 15 C -0.167 4.167 16 C 0.305 3.695 17 O -0.493 6.493 18 N -0.329 5.329 19 C -0.077 4.077 20 H 0.091 0.909 21 H 0.094 0.906 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.905 3.339 -5.731 7.241 hybrid contribution -0.005 0.172 1.075 1.089 sum -2.910 3.511 -4.656 6.517 Atomic orbital electron populations 1.21990 0.93333 1.01848 1.02858 1.21193 0.95588 0.95583 0.83378 0.91507 1.18920 0.92330 0.95111 0.91305 0.97713 1.21327 1.37060 1.06176 0.91293 0.91628 1.25658 0.94958 0.96014 1.01623 1.69988 1.40206 1.21467 1.23810 0.85635 0.77575 0.79556 0.79347 1.20460 1.21553 1.18990 1.21638 0.99421 0.96326 0.97569 1.21628 1.00321 1.01619 0.93105 1.20534 0.80519 0.77715 0.90771 1.90572 1.69425 1.56530 1.32767 1.47551 1.30460 1.43998 1.10854 1.21878 0.97617 1.02321 0.85885 0.90926 0.90582 0.93573 0.92999 0.90144 0.94077 0.89404 0.88548 0.90810 0.90446 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 8.33 71.99 0.60 -3.96 16 2 C 0.14 5.45 2.73 45.11 0.12 5.58 16 3 H 0.07 2.49 8.11 -2.38 -0.02 2.47 16 4 C 0.04 1.94 1.60 -11.45 -0.02 1.92 16 5 H 0.00 0.25 8.11 -2.39 -0.02 0.23 16 6 C -0.52 -25.70 7.90 25.60 0.20 -25.50 16 7 H 0.07 3.10 7.32 -2.91 -0.02 3.08 16 8 C 0.02 0.85 5.29 84.65 0.45 1.29 16 9 N -0.92 -49.54 11.31 21.45 0.24 -49.30 16 10 Si 0.95 40.70 29.54 68.60 2.03 42.72 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 14 C -0.11 -4.99 5.17 30.73 0.16 -4.83 16 15 C -0.13 -5.14 6.03 29.71 0.18 -4.96 16 16 C 0.51 21.26 7.47 87.71 0.66 21.92 16 17 O -0.61 -27.46 15.95 -3.04 -0.05 -27.51 16 18 N -0.60 -22.05 3.11 -827.33 -2.57 -24.62 16 19 C 0.07 1.89 9.50 127.77 1.21 3.10 16 20 H 0.07 2.40 7.23 -2.39 -0.02 2.38 16 21 H 0.08 1.91 6.82 -2.39 -0.02 1.90 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 24 H 0.08 4.05 5.95 -2.39 -0.01 4.04 16 25 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 26 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 27 H 0.10 3.55 8.14 -2.38 -0.02 3.53 16 28 H 0.07 2.33 6.59 -2.38 -0.02 2.31 16 29 H 0.08 1.94 6.86 -2.38 -0.02 1.92 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -58.10 241.23 4.32 -53.78 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.11 Total: 10.37 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 3.56 Total: -5.44 kcal Atomic # 7 Polarization: -71.59 SS G_CDS: -2.33 Total: -73.92 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -58.10 4.32 -53.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709915949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.882 kcal (2) G-P(sol) polarization free energy of solvation -58.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds