Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52504 * 1 3 3 H 1.11109 * 106.93208 * 2 1 4 4 N 1.46112 * 111.67890 * 116.99300 * 2 1 3 5 5 C 1.32346 * 126.33889 * 62.62428 * 4 2 1 6 6 O 1.22434 * 118.05311 * 184.65572 * 5 4 2 7 7 C 1.50981 * 123.90128 * 4.67415 * 5 4 2 8 8 C 1.52948 * 108.75190 * 60.83395 * 7 5 4 9 9 C 1.51710 * 110.64717 * 277.64051 * 8 7 5 10 10 C 1.51227 * 114.34500 * 74.16059 * 9 8 7 11 11 H 1.09821 * 108.43834 * 52.43117 * 10 9 8 12 12 C 1.51129 * 108.90755 * 169.45296 * 10 9 8 13 13 H 1.08003 * 119.99392 * 124.82725 * 12 10 9 14 14 C 1.37871 * 120.00299 * 304.82912 * 12 10 9 15 15 N 1.31516 * 120.00178 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99921 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47270 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47389 * 120.00266 * 16 14 12 19 19 H 1.48500 * 109.46715 * 239.99869 * 16 14 12 20 20 H 1.09003 * 109.46578 * 303.01078 * 1 2 3 21 21 H 1.09005 * 109.46771 * 63.00155 * 1 2 3 22 22 H 1.08991 * 109.47406 * 183.00621 * 1 2 3 23 23 H 0.98863 * 117.12005 * 242.53802 * 4 2 1 24 24 H 1.08627 * 110.90267 * 299.36005 * 7 5 4 25 25 H 1.09569 * 109.17620 * 179.63341 * 7 5 4 26 26 H 1.09042 * 109.24655 * 37.92836 * 8 7 5 27 27 H 1.09014 * 109.30015 * 157.26252 * 8 7 5 28 28 H 1.09859 * 107.54345 * 193.81805 * 9 8 7 29 29 H 1.08544 * 109.26082 * 309.57234 * 9 8 7 30 30 H 0.96994 * 120.00425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5250 0.0000 0.0000 3 1 1.8486 1.0629 0.0000 4 7 2.0648 -0.6163 1.2099 5 6 1.8989 -1.8728 1.5909 6 8 2.3476 -2.2083 2.6796 7 6 1.1898 -2.9173 0.7629 8 6 1.9395 -3.0890 -0.5592 9 6 1.5297 -2.0156 -1.5499 10 6 2.0961 -0.6450 -1.2538 11 1 3.1842 -0.7368 -1.1363 12 6 1.8344 0.2590 -2.4363 13 1 1.3135 1.1946 -2.2959 14 6 2.2606 -0.1107 -3.6943 15 7 2.8944 -1.2503 -3.8654 16 14 1.9376 1.0070 -5.1558 17 1 1.2121 2.2201 -4.7005 18 1 3.2298 1.4040 -5.7705 19 1 1.1137 0.2851 -6.1584 20 1 -0.3632 0.5599 0.8618 21 1 -0.3633 0.4666 -0.9157 22 1 -0.3634 -1.0261 0.0539 23 1 2.6084 -0.0426 1.8038 24 1 0.1587 -2.6302 0.5771 25 1 1.1969 -3.8706 1.3030 26 1 3.0121 -3.0180 -0.3760 27 1 1.7128 -4.0699 -0.9772 28 1 1.8935 -2.3225 -2.5400 29 1 0.4466 -1.9771 -1.6085 30 1 3.1946 -1.5102 -4.7504 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917244.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = -58.444667 kcal Electronic energy + Delta-G solvation = -13199.350116 eV Core-core repulsion = 10993.633275 eV Total energy + Delta-G solvation = -2205.716841 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.47425 -36.40153 -33.54121 -32.68221 -30.50173 -28.03249 -25.76126 -23.40745 -22.56114 -19.34950 -18.24561 -16.80451 -16.27497 -15.44972 -14.76146 -14.18208 -13.52736 -13.33347 -13.04192 -12.65895 -12.37294 -11.84863 -11.42546 -11.11138 -10.98767 -10.81777 -10.69352 -10.38790 -9.99402 -9.64230 -9.36719 -9.12466 -8.92239 -8.49893 -8.20711 -6.06974 -4.20093 3.21922 3.24102 3.31069 3.33283 3.94435 4.34047 5.17130 5.22618 5.50237 5.65401 5.73967 5.98003 6.01583 6.15046 6.29204 6.47302 6.56318 6.61274 6.78312 6.86036 7.09561 7.26623 7.45840 7.58248 7.79079 7.99583 8.17312 8.37505 8.79117 8.85148 9.46099 10.92864 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055527 B = 0.011391 C = 0.010412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.139495 B = 2457.523748 C = 2688.532419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 H 0.074 0.926 4 N -0.704 5.704 5 C 0.520 3.480 6 O -0.597 6.597 7 C -0.133 4.133 8 C -0.108 4.108 9 C -0.132 4.132 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.510 4.510 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.054 0.946 23 H 0.389 0.611 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.035 0.965 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 0.508 3.443 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.038 3.962 3 H 0.092 0.908 4 N -0.351 5.351 5 C 0.307 3.693 6 O -0.480 6.480 7 C -0.173 4.173 8 C -0.146 4.146 9 C -0.170 4.170 10 C 0.022 3.978 11 H 0.046 0.954 12 C -0.549 4.549 13 H 0.077 0.923 14 C -0.141 4.141 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.073 0.927 23 H 0.223 0.777 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.054 0.946 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.821 0.102 3.641 5.279 hybrid contribution 0.051 0.790 -0.743 1.086 sum -3.770 0.891 2.897 4.838 Atomic orbital electron populations 1.22016 0.95758 1.01781 1.01639 1.21341 0.93498 0.96817 0.84589 0.90775 1.46046 1.52698 1.10785 1.25562 1.20525 0.79301 0.83496 0.85941 1.90981 1.53286 1.80493 1.23288 1.21923 1.00384 0.97213 0.97740 1.21308 0.99522 1.00303 0.93500 1.21252 0.98879 0.94617 1.02213 1.18621 0.96201 0.92853 0.90114 0.95431 1.21262 1.37127 1.04544 0.91955 0.92262 1.24944 0.94964 0.95221 0.98924 1.69731 1.38806 1.21216 1.22752 0.86510 0.77983 0.80767 0.82591 1.19749 1.21043 1.21010 0.94154 0.90327 0.92668 0.77661 0.89507 0.90146 0.92659 0.92534 0.86845 0.94604 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.71 36.90 0.32 -2.27 16 2 C 0.14 2.64 2.57 -68.84 -0.18 2.46 16 3 H 0.07 1.34 8.13 -50.71 -0.41 0.93 16 4 N -0.70 -12.78 4.91 -54.22 -0.27 -13.04 16 5 C 0.52 10.22 6.95 -11.92 -0.08 10.14 16 6 O -0.60 -13.45 17.78 4.52 0.08 -13.37 16 7 C -0.13 -2.34 5.41 -27.77 -0.15 -2.49 16 8 C -0.11 -2.08 5.62 -27.41 -0.15 -2.23 16 9 C -0.13 -2.88 4.13 -28.28 -0.12 -2.99 16 10 C 0.04 0.93 1.72 -92.90 -0.16 0.77 16 11 H 0.03 0.71 8.21 -51.46 -0.42 0.29 16 12 C -0.51 -12.62 7.87 -34.23 -0.27 -12.89 16 13 H 0.06 1.43 7.48 -52.48 -0.39 1.03 16 14 C 0.06 1.55 5.25 -17.82 -0.09 1.45 16 15 N -0.89 -23.67 10.85 55.43 0.60 -23.07 16 16 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.08 1.36 7.38 -51.93 -0.38 0.98 16 22 H 0.05 0.91 4.68 -51.93 -0.24 0.67 16 23 H 0.39 6.42 8.86 -40.10 -0.36 6.06 16 24 H 0.09 1.41 5.79 -52.14 -0.30 1.11 16 25 H 0.08 1.32 8.13 -51.61 -0.42 0.90 16 26 H 0.05 1.14 7.91 -51.91 -0.41 0.73 16 27 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 28 H 0.11 2.85 5.23 -51.44 -0.27 2.58 16 29 H 0.04 0.75 6.71 -52.18 -0.35 0.40 16 30 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 235.73 15.07 3.55 3.55 Total: -1.00 -27.96 235.73 -5.87 -33.84 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.94 Total: 5.20 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.88 Total: -8.05 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.34 Total: -36.11 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.08 Total: -13.37 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.96 -5.87 -33.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917244.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.608 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds