Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52504 * 1 3 3 H 1.11109 * 106.93208 * 2 1 4 4 N 1.46112 * 111.67890 * 116.99300 * 2 1 3 5 5 C 1.32346 * 126.33889 * 62.62428 * 4 2 1 6 6 O 1.22434 * 118.05311 * 184.65572 * 5 4 2 7 7 C 1.50981 * 123.90128 * 4.67415 * 5 4 2 8 8 C 1.52948 * 108.75190 * 60.83395 * 7 5 4 9 9 C 1.51710 * 110.64717 * 277.64051 * 8 7 5 10 10 C 1.51227 * 114.34500 * 74.16059 * 9 8 7 11 11 H 1.09821 * 108.43834 * 52.43117 * 10 9 8 12 12 C 1.51129 * 108.90755 * 169.45296 * 10 9 8 13 13 H 1.08003 * 119.99392 * 124.82725 * 12 10 9 14 14 C 1.37871 * 120.00299 * 304.82912 * 12 10 9 15 15 N 1.31516 * 120.00178 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99921 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47270 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47389 * 120.00266 * 16 14 12 19 19 H 1.48500 * 109.46715 * 239.99869 * 16 14 12 20 20 H 1.09003 * 109.46578 * 303.01078 * 1 2 3 21 21 H 1.09005 * 109.46771 * 63.00155 * 1 2 3 22 22 H 1.08991 * 109.47406 * 183.00621 * 1 2 3 23 23 H 0.98863 * 117.12005 * 242.53802 * 4 2 1 24 24 H 1.08627 * 110.90267 * 299.36005 * 7 5 4 25 25 H 1.09569 * 109.17620 * 179.63341 * 7 5 4 26 26 H 1.09042 * 109.24655 * 37.92836 * 8 7 5 27 27 H 1.09014 * 109.30015 * 157.26252 * 8 7 5 28 28 H 1.09859 * 107.54345 * 193.81805 * 9 8 7 29 29 H 1.08544 * 109.26082 * 309.57234 * 9 8 7 30 30 H 0.96994 * 120.00425 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5250 0.0000 0.0000 3 1 1.8486 1.0629 0.0000 4 7 2.0648 -0.6163 1.2099 5 6 1.8989 -1.8728 1.5909 6 8 2.3476 -2.2083 2.6796 7 6 1.1898 -2.9173 0.7629 8 6 1.9395 -3.0890 -0.5592 9 6 1.5297 -2.0156 -1.5499 10 6 2.0961 -0.6450 -1.2538 11 1 3.1842 -0.7368 -1.1363 12 6 1.8344 0.2590 -2.4363 13 1 1.3135 1.1946 -2.2959 14 6 2.2606 -0.1107 -3.6943 15 7 2.8944 -1.2503 -3.8654 16 14 1.9376 1.0070 -5.1558 17 1 1.2121 2.2201 -4.7005 18 1 3.2298 1.4040 -5.7705 19 1 1.1137 0.2851 -6.1584 20 1 -0.3632 0.5599 0.8618 21 1 -0.3633 0.4666 -0.9157 22 1 -0.3634 -1.0261 0.0539 23 1 2.6084 -0.0426 1.8038 24 1 0.1587 -2.6302 0.5771 25 1 1.1969 -3.8706 1.3030 26 1 3.0121 -3.0180 -0.3760 27 1 1.7128 -4.0699 -0.9772 28 1 1.8935 -2.3225 -2.5400 29 1 0.4466 -1.9771 -1.6085 30 1 3.1946 -1.5102 -4.7504 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917244.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = -76.642582 kcal Electronic energy + Delta-G solvation = -13200.139237 eV Core-core repulsion = 10993.633275 eV Total energy + Delta-G solvation = -2206.505962 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.04792 -38.07982 -35.20785 -34.40159 -32.17621 -29.57462 -27.52309 -25.06246 -24.19557 -20.97469 -19.85044 -18.47947 -17.99746 -17.12013 -16.53238 -15.82679 -15.11550 -14.87227 -14.64350 -14.29113 -14.02171 -13.38252 -12.99253 -12.87667 -12.64463 -12.48417 -12.33718 -11.97820 -11.74406 -11.39244 -10.98854 -10.75797 -10.72038 -10.34175 -9.88224 -8.00469 -6.19815 1.44582 1.48717 1.57543 1.68576 2.39638 2.54643 3.21835 3.72775 4.02497 4.19784 4.22677 4.52553 4.55619 4.68820 4.78717 4.98844 5.03439 5.06943 5.26566 5.38665 5.44228 5.65537 5.67084 5.84033 5.95893 6.19469 6.47193 6.60572 6.92812 7.27745 7.49504 8.97668 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.055527 B = 0.011391 C = 0.010412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.139495 B = 2457.523748 C = 2688.532419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.147 3.853 3 H 0.082 0.918 4 N -0.696 5.696 5 C 0.515 3.485 6 O -0.627 6.627 7 C -0.126 4.126 8 C -0.101 4.101 9 C -0.125 4.125 10 C 0.043 3.957 11 H -0.014 1.014 12 C -0.518 4.518 13 H 0.065 0.935 14 C 0.012 3.988 15 N -0.914 5.914 16 Si 0.952 3.048 17 H -0.263 1.263 18 H -0.289 1.289 19 H -0.284 1.284 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.398 0.602 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.033 0.967 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 1.039 3.796 6.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.043 3.957 3 H 0.100 0.900 4 N -0.342 5.342 5 C 0.304 3.696 6 O -0.514 6.514 7 C -0.165 4.165 8 C -0.139 4.139 9 C -0.163 4.163 10 C 0.024 3.976 11 H 0.004 0.996 12 C -0.557 4.557 13 H 0.084 0.916 14 C -0.186 4.186 15 N -0.555 5.555 16 Si 0.778 3.222 17 H -0.186 1.186 18 H -0.215 1.215 19 H -0.210 1.210 20 H 0.083 0.917 21 H 0.092 0.908 22 H 0.077 0.923 23 H 0.233 0.767 24 H 0.126 0.874 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.208 0.657 3.994 6.596 hybrid contribution 0.521 0.638 -0.858 1.190 sum -4.686 1.295 3.136 5.786 Atomic orbital electron populations 1.21957 0.93629 1.02469 1.02549 1.21188 0.94992 0.96557 0.82950 0.89994 1.45979 1.52301 1.10737 1.25233 1.20893 0.79054 0.84013 0.85685 1.90970 1.54687 1.80972 1.24740 1.21903 1.00829 0.97512 0.96263 1.21187 0.98367 1.00360 0.93977 1.21105 0.99080 0.94849 1.01273 1.18572 0.93952 0.93501 0.91579 0.99590 1.21622 1.36456 1.04948 0.92662 0.91636 1.25665 0.95106 0.96352 1.01470 1.69900 1.39886 1.22671 1.23002 0.85594 0.77489 0.79434 0.79642 1.18649 1.21548 1.21018 0.91667 0.90797 0.92290 0.76702 0.87439 0.88459 0.94827 0.90613 0.90154 0.93697 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 8.71 71.82 0.63 -3.92 16 2 C 0.15 5.24 2.57 44.61 0.11 5.35 16 3 H 0.08 2.81 8.13 -1.25 -0.01 2.80 16 4 N -0.70 -24.17 4.91 -444.70 -2.18 -26.35 16 5 C 0.51 19.38 6.95 88.12 0.61 19.99 16 6 O -0.63 -27.46 17.78 -6.75 -0.12 -27.58 16 7 C -0.13 -4.12 5.41 29.92 0.16 -3.96 16 8 C -0.10 -3.76 5.62 30.15 0.17 -3.59 16 9 C -0.13 -5.39 4.13 29.59 0.12 -5.27 16 10 C 0.04 1.94 1.72 -12.27 -0.02 1.92 16 11 H -0.01 -0.74 8.21 -1.95 -0.02 -0.75 16 12 C -0.52 -25.36 7.87 25.73 0.20 -25.16 16 13 H 0.07 3.06 7.48 -2.91 -0.02 3.04 16 14 C 0.01 0.62 5.25 84.65 0.44 1.07 16 15 N -0.91 -49.63 10.85 21.45 0.23 -49.39 16 16 Si 0.95 40.70 29.54 68.60 2.03 42.72 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 20 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.07 2.36 7.38 -2.38 -0.02 2.34 16 22 H 0.06 1.75 4.68 -2.39 -0.01 1.74 16 23 H 0.40 12.54 8.86 -91.30 -0.81 11.73 16 24 H 0.11 3.11 5.79 -2.58 -0.01 3.10 16 25 H 0.10 2.91 8.13 -2.08 -0.02 2.89 16 26 H 0.03 1.38 7.91 -2.36 -0.02 1.36 16 27 H 0.08 2.52 8.14 -2.38 -0.02 2.51 16 28 H 0.08 4.08 5.23 -1.93 -0.01 4.07 16 29 H 0.04 1.82 6.71 -2.63 -0.02 1.80 16 30 H 0.26 13.52 8.31 -92.71 -0.77 12.74 16 Total: -1.00 -59.01 235.73 2.74 -56.28 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.35 Total: 17.90 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 2.43 Total: -13.57 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.95 Total: -75.74 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.12 Total: -27.58 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -59.01 2.74 -56.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917244.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.365 kcal (2) G-P(sol) polarization free energy of solvation -59.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds