Wall clock time and date at job start Mon Mar 30 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.74004 * 2 1 4 4 N 1.47131 * 109.54056 * 239.56635 * 2 1 3 5 5 C 1.33365 * 120.39654 * 168.21887 * 4 2 1 6 6 O 1.21283 * 119.89499 * 180.32333 * 5 4 2 7 7 C 1.51427 * 120.21264 * 0.34409 * 5 4 2 8 8 C 1.53056 * 108.49012 * 71.20042 * 7 5 4 9 9 C 1.51792 * 110.74751 * 275.07680 * 8 7 5 10 10 C 1.51774 * 113.81026 * 66.81842 * 9 8 7 11 11 H 1.08996 * 109.20272 * 53.36616 * 10 9 8 12 12 C 1.50700 * 109.19705 * 172.69436 * 10 9 8 13 13 H 1.08006 * 120.00438 * 65.76169 * 12 10 9 14 14 C 1.37880 * 120.00008 * 245.76687 * 12 10 9 15 15 N 1.31514 * 119.99758 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00147 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47614 * 119.99727 * 16 14 12 19 19 H 1.48505 * 109.47218 * 240.00071 * 16 14 12 20 20 H 1.08999 * 109.47181 * 305.73234 * 1 2 3 21 21 H 1.08994 * 109.46971 * 65.73979 * 1 2 3 22 22 H 1.09004 * 109.46833 * 185.73849 * 1 2 3 23 23 H 0.97008 * 119.82009 * 348.23985 * 4 2 1 24 24 H 1.08998 * 109.63533 * 311.49776 * 7 5 4 25 25 H 1.09000 * 109.63104 * 190.89543 * 7 5 4 26 26 H 1.08998 * 109.22575 * 154.74985 * 8 7 5 27 27 H 1.09002 * 109.18820 * 35.38202 * 8 7 5 28 28 H 1.08998 * 108.61348 * 305.69655 * 9 8 7 29 29 H 1.09001 * 108.50328 * 187.85787 * 9 8 7 30 30 H 0.97001 * 119.99587 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 7 2.0221 -0.7024 -1.1955 5 6 3.3091 -0.6312 -1.5381 6 8 3.7038 -1.2089 -2.5287 7 6 4.2792 0.1683 -0.6938 8 6 4.5053 -0.5776 0.6234 9 6 3.4235 -0.2308 1.6302 10 6 2.0434 -0.7295 1.2430 11 1 2.0935 -1.7985 1.0361 12 6 1.0912 -0.4904 2.3864 13 1 0.8467 0.5188 2.6835 14 6 0.5323 -1.5600 3.0532 15 7 0.8298 -2.7888 2.6912 16 14 -0.6473 -1.2636 4.4709 17 1 -0.8146 0.1973 4.6786 18 1 -1.9642 -1.8731 4.1550 19 1 -0.1006 -1.8794 5.7068 20 1 -0.3633 0.6001 0.8342 21 1 -0.3633 0.4222 -0.9369 22 1 -0.3633 -1.0226 0.1028 23 1 1.4070 -1.2201 -1.7382 24 1 3.8609 1.1539 -0.4895 25 1 5.2263 0.2717 -1.2233 26 1 5.4772 -0.2998 1.0310 27 1 4.4890 -1.6510 0.4346 28 1 3.3841 0.8530 1.7390 29 1 3.6937 -0.6665 2.5922 30 1 0.4363 -3.5412 3.1601 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:52 Heat of formation + Delta-G solvation = -61.835744 kcal Electronic energy + Delta-G solvation = -13141.904300 eV Core-core repulsion = 10936.040410 eV Total energy + Delta-G solvation = -2205.863889 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.51624 -36.45638 -33.47347 -32.91121 -30.53850 -27.93709 -25.66048 -23.64076 -21.59413 -19.49435 -18.94728 -16.79903 -16.20048 -15.50462 -14.79501 -14.12120 -13.66416 -13.36620 -12.86196 -12.47618 -12.44256 -11.74256 -11.42182 -11.22434 -11.00616 -10.89995 -10.64814 -10.42736 -10.20550 -9.76270 -9.29091 -9.17868 -8.95721 -8.61458 -8.11501 -6.12340 -4.14936 3.21583 3.30136 3.31707 3.33911 4.06519 4.34809 5.15826 5.18444 5.46578 5.60859 5.77266 5.99509 6.08970 6.11027 6.25214 6.37716 6.46589 6.73791 6.79592 6.96405 7.04528 7.13530 7.47299 7.58418 7.69899 7.79680 8.06138 8.31479 8.90368 8.96828 9.47531 10.96720 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.011576 C = 0.010723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.892189 B = 2418.182030 C = 2610.564801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.137 3.863 3 H 0.059 0.941 4 N -0.711 5.711 5 C 0.517 3.483 6 O -0.583 6.583 7 C -0.135 4.135 8 C -0.114 4.114 9 C -0.108 4.108 10 C 0.013 3.987 11 H 0.077 0.923 12 C -0.508 4.508 13 H 0.056 0.944 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.078 0.922 21 H 0.027 0.973 22 H 0.062 0.938 23 H 0.391 0.609 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.489 5.655 -2.240 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.034 3.966 3 H 0.077 0.923 4 N -0.360 5.360 5 C 0.304 3.696 6 O -0.465 6.465 7 C -0.175 4.175 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.006 4.006 11 H 0.095 0.905 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.210 1.210 20 H 0.097 0.903 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.227 0.773 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.771 5.298 -2.547 6.139 hybrid contribution -0.933 -0.139 0.756 1.209 sum 0.838 5.159 -1.791 5.525 Atomic orbital electron populations 1.21756 0.94080 1.03195 0.99650 1.21817 0.95049 0.94799 0.84977 0.92295 1.46359 1.09049 1.51463 1.29164 1.20485 0.83547 0.81028 0.84532 1.90660 1.78206 1.48834 1.28797 1.21941 0.98591 0.99659 0.97277 1.21338 0.99663 1.00221 0.93930 1.21385 0.95822 0.99627 0.97736 1.19206 0.90998 0.98975 0.91427 0.90487 1.20947 1.25996 0.92601 1.15075 0.92576 1.24957 0.96336 0.95257 0.97009 1.69908 1.43896 0.97978 1.41039 0.86602 0.80903 0.78415 0.82478 1.19644 1.21007 1.21040 0.90318 0.95366 0.91913 0.77348 0.89800 0.89794 0.92279 0.92135 0.94104 0.92421 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.34 37.16 0.31 -2.07 16 2 C 0.14 2.62 2.73 -67.59 -0.18 2.44 16 3 H 0.06 1.06 6.70 -51.93 -0.35 0.71 16 4 N -0.71 -13.46 5.10 -53.48 -0.27 -13.73 16 5 C 0.52 10.22 7.06 -11.26 -0.08 10.14 16 6 O -0.58 -13.30 17.92 5.55 0.10 -13.20 16 7 C -0.13 -2.24 5.57 -27.50 -0.15 -2.39 16 8 C -0.11 -1.99 5.67 -27.31 -0.15 -2.15 16 9 C -0.11 -2.15 4.54 -27.97 -0.13 -2.27 16 10 C 0.01 0.30 2.15 -92.40 -0.20 0.10 16 11 H 0.08 2.02 6.81 -51.93 -0.35 1.66 16 12 C -0.51 -12.42 6.12 -34.44 -0.21 -12.63 16 13 H 0.06 1.36 7.66 -52.48 -0.40 0.95 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.89 -24.45 12.60 55.43 0.70 -23.75 16 16 Si 0.89 20.00 29.54 -169.99 -5.02 14.98 16 17 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H 0.08 1.48 7.01 -51.93 -0.36 1.11 16 21 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 23 H 0.39 7.12 8.59 -40.82 -0.35 6.77 16 24 H 0.08 1.27 6.77 -51.93 -0.35 0.91 16 25 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.17 7.86 -51.93 -0.41 0.77 16 28 H 0.04 0.75 7.88 -51.93 -0.41 0.34 16 29 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 242.35 15.07 3.65 3.65 Total: -1.00 -28.19 242.35 -5.97 -34.16 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.23 Total: 5.10 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.90 Total: -7.22 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.43 Total: -37.48 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.10 Total: -13.20 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.19 -5.97 -34.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.675 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds