Wall clock time and date at job start Mon Mar 30 2020 02:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.74004 * 2 1 4 4 N 1.47131 * 109.54056 * 239.56635 * 2 1 3 5 5 C 1.33365 * 120.39654 * 168.21887 * 4 2 1 6 6 O 1.21283 * 119.89499 * 180.32333 * 5 4 2 7 7 C 1.51427 * 120.21264 * 0.34409 * 5 4 2 8 8 C 1.53056 * 108.49012 * 71.20042 * 7 5 4 9 9 C 1.51792 * 110.74751 * 275.07680 * 8 7 5 10 10 C 1.51774 * 113.81026 * 66.81842 * 9 8 7 11 11 H 1.08996 * 109.20272 * 53.36616 * 10 9 8 12 12 C 1.50700 * 109.19705 * 172.69436 * 10 9 8 13 13 H 1.08006 * 120.00438 * 65.76169 * 12 10 9 14 14 C 1.37880 * 120.00008 * 245.76687 * 12 10 9 15 15 N 1.31514 * 119.99758 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00147 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47190 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47614 * 119.99727 * 16 14 12 19 19 H 1.48505 * 109.47218 * 240.00071 * 16 14 12 20 20 H 1.08999 * 109.47181 * 305.73234 * 1 2 3 21 21 H 1.08994 * 109.46971 * 65.73979 * 1 2 3 22 22 H 1.09004 * 109.46833 * 185.73849 * 1 2 3 23 23 H 0.97008 * 119.82009 * 348.23985 * 4 2 1 24 24 H 1.08998 * 109.63533 * 311.49776 * 7 5 4 25 25 H 1.09000 * 109.63104 * 190.89543 * 7 5 4 26 26 H 1.08998 * 109.22575 * 154.74985 * 8 7 5 27 27 H 1.09002 * 109.18820 * 35.38202 * 8 7 5 28 28 H 1.08998 * 108.61348 * 305.69655 * 9 8 7 29 29 H 1.09001 * 108.50328 * 187.85787 * 9 8 7 30 30 H 0.97001 * 119.99587 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0260 0.0000 4 7 2.0221 -0.7024 -1.1955 5 6 3.3091 -0.6312 -1.5381 6 8 3.7038 -1.2089 -2.5287 7 6 4.2792 0.1683 -0.6938 8 6 4.5053 -0.5776 0.6234 9 6 3.4235 -0.2308 1.6302 10 6 2.0434 -0.7295 1.2430 11 1 2.0935 -1.7985 1.0361 12 6 1.0912 -0.4904 2.3864 13 1 0.8467 0.5188 2.6835 14 6 0.5323 -1.5600 3.0532 15 7 0.8298 -2.7888 2.6912 16 14 -0.6473 -1.2636 4.4709 17 1 -0.8146 0.1973 4.6786 18 1 -1.9642 -1.8731 4.1550 19 1 -0.1006 -1.8794 5.7068 20 1 -0.3633 0.6001 0.8342 21 1 -0.3633 0.4222 -0.9369 22 1 -0.3633 -1.0226 0.1028 23 1 1.4070 -1.2201 -1.7382 24 1 3.8609 1.1539 -0.4895 25 1 5.2263 0.2717 -1.2233 26 1 5.4772 -0.2998 1.0310 27 1 4.4890 -1.6510 0.4346 28 1 3.3841 0.8530 1.7390 29 1 3.6937 -0.6665 2.5922 30 1 0.4363 -3.5412 3.1601 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917245.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:52 Heat of formation + Delta-G solvation = -80.423820 kcal Electronic energy + Delta-G solvation = -13142.710339 eV Core-core repulsion = 10936.040410 eV Total energy + Delta-G solvation = -2206.669929 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08465 -38.12721 -35.00113 -34.71210 -32.25613 -29.46601 -27.39375 -25.33495 -23.15874 -21.13815 -20.45909 -18.60862 -17.78759 -17.16894 -16.59504 -15.76504 -15.19061 -14.89870 -14.49276 -14.17206 -14.03778 -13.26966 -13.04882 -12.86159 -12.76183 -12.52194 -12.26326 -12.06177 -11.77383 -11.35791 -11.02819 -10.89435 -10.67605 -10.52119 -9.75343 -8.08117 -6.14118 1.42635 1.47449 1.56141 1.75000 2.43813 2.59984 3.24873 3.70804 4.05443 4.21595 4.27862 4.53416 4.59681 4.65027 4.83468 4.95620 4.99781 5.18659 5.28122 5.39618 5.43775 5.58736 5.74858 5.87107 5.93389 6.00727 6.34630 6.57658 7.04918 7.35834 7.50648 9.01305 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050539 B = 0.011576 C = 0.010723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.892189 B = 2418.182030 C = 2610.564801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.144 3.856 3 H 0.086 0.914 4 N -0.708 5.708 5 C 0.509 3.491 6 O -0.618 6.618 7 C -0.126 4.126 8 C -0.106 4.106 9 C -0.104 4.104 10 C 0.009 3.991 11 H 0.032 0.968 12 C -0.501 4.501 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.932 5.932 16 Si 0.945 3.055 17 H -0.258 1.258 18 H -0.287 1.287 19 H -0.290 1.290 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.033 0.967 23 H 0.392 0.608 24 H 0.110 0.890 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 7.879 -2.231 8.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.040 3.960 3 H 0.104 0.896 4 N -0.356 5.356 5 C 0.298 3.702 6 O -0.503 6.503 7 C -0.166 4.166 8 C -0.144 4.144 9 C -0.142 4.142 10 C -0.011 4.011 11 H 0.050 0.950 12 C -0.540 4.540 13 H 0.081 0.919 14 C -0.183 4.183 15 N -0.572 5.572 16 Si 0.772 3.228 17 H -0.182 1.182 18 H -0.213 1.213 19 H -0.217 1.217 20 H 0.095 0.905 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.227 0.773 24 H 0.128 0.872 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.011 7.552 -2.526 8.213 hybrid contribution -1.001 -0.826 0.735 1.491 sum 1.011 6.726 -1.791 7.033 Atomic orbital electron populations 1.21679 0.93559 1.01603 1.01258 1.21685 0.95449 0.95397 0.83423 0.89592 1.46375 1.09217 1.51186 1.28834 1.21127 0.83939 0.80832 0.84346 1.90643 1.78709 1.50404 1.30537 1.21964 0.98812 0.99875 0.95907 1.21247 1.00377 0.98722 0.94041 1.21262 0.94997 1.00664 0.97280 1.19189 0.92482 0.96950 0.92491 0.94976 1.21290 1.25218 0.92552 1.14914 0.91853 1.25643 0.98156 0.95122 0.99394 1.70061 1.45740 0.98787 1.42616 0.85704 0.78800 0.78799 0.79542 1.18167 1.21328 1.21681 0.90509 0.92247 0.94744 0.77288 0.87229 0.87762 0.89051 0.94901 0.91754 0.94747 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.34 71.98 0.60 -3.73 16 2 C 0.14 5.21 2.73 44.87 0.12 5.34 16 3 H 0.09 2.72 6.70 -2.38 -0.02 2.70 16 4 N -0.71 -25.91 5.10 -442.30 -2.25 -28.16 16 5 C 0.51 19.29 7.06 88.11 0.62 19.91 16 6 O -0.62 -27.70 17.92 -3.04 -0.05 -27.76 16 7 C -0.13 -3.77 5.57 30.10 0.17 -3.60 16 8 C -0.11 -3.48 5.67 30.22 0.17 -3.31 16 9 C -0.10 -3.96 4.54 29.79 0.14 -3.83 16 10 C 0.01 0.38 2.15 -11.94 -0.03 0.35 16 11 H 0.03 1.71 6.81 -2.39 -0.02 1.70 16 12 C -0.50 -24.13 6.12 25.60 0.16 -23.97 16 13 H 0.06 2.92 7.66 -2.91 -0.02 2.90 16 14 C 0.01 0.76 5.46 84.66 0.46 1.22 16 15 N -0.93 -52.60 12.60 21.45 0.27 -52.33 16 16 Si 0.94 41.02 29.54 68.60 2.03 43.05 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H 0.08 2.71 7.01 -2.39 -0.02 2.70 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.39 14.06 8.59 -92.70 -0.80 13.26 16 24 H 0.11 2.76 6.77 -2.39 -0.02 2.74 16 25 H 0.10 2.75 8.13 -2.39 -0.02 2.73 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.03 1.25 7.86 -2.39 -0.02 1.23 16 28 H 0.06 2.14 7.88 -2.39 -0.02 2.12 16 29 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 30 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -60.98 242.35 2.73 -58.25 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.33 Total: 18.58 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 2.41 Total: -11.62 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -1.98 Total: -80.50 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -60.98 2.73 -58.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917245.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.179 kcal (2) G-P(sol) polarization free energy of solvation -60.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds