Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47213 * 2 1 4 4 C 1.34414 * 124.35088 * 270.01836 * 3 2 1 5 5 O 1.21274 * 124.94441 * 359.57660 * 4 3 2 6 6 C 1.51287 * 110.11838 * 179.57449 * 4 3 2 7 7 C 1.54632 * 104.19063 * 343.74840 * 6 4 3 8 8 H 1.09003 * 110.96639 * 142.92133 * 7 6 4 9 9 C 1.50700 * 111.00265 * 266.66278 * 7 6 4 10 10 H 1.08003 * 119.99934 * 107.05857 * 9 7 6 11 11 C 1.37875 * 120.00200 * 287.05816 * 9 7 6 12 12 N 1.31517 * 120.00419 * 179.97438 * 11 9 7 13 13 Si 1.86807 * 119.99929 * 0.02562 * 11 9 7 14 14 H 1.48493 * 109.47089 * 89.99843 * 13 11 9 15 15 H 1.48503 * 109.46936 * 209.99650 * 13 11 9 16 16 H 1.48495 * 109.46738 * 329.99305 * 13 11 9 17 17 C 1.46767 * 124.35054 * 89.99961 * 3 2 1 18 18 H 1.08997 * 110.32267 * 77.99430 * 17 3 2 19 19 C 1.53001 * 110.24495 * 316.03501 * 17 3 2 20 20 H 1.09000 * 109.47257 * 300.00107 * 1 2 3 21 21 H 1.09008 * 109.46691 * 59.99769 * 1 2 3 22 22 H 1.08997 * 109.47590 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47257 * 239.99893 * 2 1 3 24 24 H 1.09003 * 109.47090 * 119.99989 * 2 1 3 25 25 H 1.09002 * 110.48551 * 225.07355 * 6 4 3 26 26 H 1.08992 * 110.60194 * 102.48003 * 6 4 3 27 27 H 0.96995 * 120.00620 * 179.97438 * 12 11 9 28 28 H 1.08993 * 109.47241 * 311.32555 * 19 17 3 29 29 H 1.08997 * 109.47438 * 191.31931 * 19 17 3 30 30 H 1.09006 * 109.46962 * 71.32336 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2708 2.0963 -1.1097 5 8 2.1345 1.6898 -2.2441 6 6 2.7498 3.4823 -0.7378 7 6 2.3524 3.6345 0.7488 8 1 3.1124 4.1874 1.3011 9 6 1.0048 4.2955 0.8828 10 1 0.1450 3.7135 1.1803 11 6 0.8693 5.6433 0.6255 12 7 -0.3069 6.2201 0.7419 13 14 2.3562 6.6499 0.1102 14 1 2.4769 6.6326 -1.3697 15 1 2.1921 8.0500 0.5772 16 1 3.5816 6.0672 0.7137 17 6 2.2944 2.1619 1.2117 18 1 3.2497 1.8646 1.6442 19 6 1.1701 1.9716 2.2318 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.2482 4.2353 -1.3458 26 1 3.8309 3.5584 -0.8534 27 1 -0.4021 7.1683 0.5612 28 1 0.2069 2.1126 1.7415 29 1 1.2798 2.7013 3.0340 30 1 1.2226 0.9649 2.6468 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917369.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -38.172445 kcal Electronic energy + Delta-G solvation = -13224.298304 eV Core-core repulsion = 11019.460532 eV Total energy + Delta-G solvation = -2204.837772 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81221 -36.16000 -33.90413 -32.00892 -29.97738 -29.11299 -25.47108 -23.23916 -22.74924 -19.97182 -18.47969 -17.17655 -15.82031 -15.23583 -14.72957 -14.28783 -13.65954 -13.21263 -12.86170 -12.58385 -12.38974 -12.28525 -11.75613 -11.58979 -11.27158 -11.13561 -10.78182 -10.61762 -10.40430 -9.83619 -9.71043 -9.05082 -8.97391 -8.62727 -8.03878 -6.14296 -4.16181 3.24655 3.30598 3.33473 3.38846 3.73265 4.34869 5.07335 5.19572 5.41940 5.56424 5.66329 5.73124 5.77707 5.95251 5.99110 6.20038 6.20579 6.31960 6.42597 6.50759 6.59834 6.79342 7.03548 7.09563 7.32779 7.62821 7.85970 8.41418 8.89442 8.95868 9.46109 10.97252 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040624 B = 0.014093 C = 0.012561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.081568 B = 1986.393514 C = 2228.534376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 N -0.611 5.611 4 C 0.532 3.468 5 O -0.561 6.561 6 C -0.166 4.166 7 C 0.007 3.993 8 H 0.056 0.944 9 C -0.514 4.514 10 H 0.088 0.912 11 C 0.075 3.925 12 N -0.895 5.895 13 Si 0.869 3.131 14 H -0.274 1.274 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.140 3.860 18 H 0.059 0.941 19 C -0.141 4.141 20 H 0.065 0.935 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.076 0.924 27 H 0.265 0.735 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -7.958 2.549 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 N -0.345 5.345 4 C 0.322 3.678 5 O -0.441 6.441 6 C -0.207 4.207 7 C -0.012 4.012 8 H 0.074 0.926 9 C -0.551 4.551 10 H 0.105 0.895 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.697 3.303 14 H -0.200 1.200 15 H -0.215 1.215 16 H -0.186 1.186 17 C 0.037 3.963 18 H 0.077 0.923 19 C -0.198 4.198 20 H 0.084 0.916 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.894 -8.069 1.961 9.638 hybrid contribution 0.630 0.697 -0.313 0.991 sum 5.524 -7.372 1.647 9.358 Atomic orbital electron populations 1.22275 0.96139 1.01247 1.03365 1.21145 0.94380 0.82398 1.01745 1.48394 1.65307 1.12873 1.07879 1.20977 0.75348 0.87706 0.83772 1.90596 1.55555 1.76233 1.21679 1.22879 1.00398 0.94916 1.02490 1.20303 0.99252 0.91441 0.90189 0.92584 1.21040 0.93192 0.93921 1.46988 0.89466 1.24991 0.95505 0.97750 0.94514 1.69880 1.22884 1.11672 1.48767 0.87001 0.84120 0.79667 0.79555 1.20001 1.21535 1.18594 1.21706 0.96928 0.92741 0.84969 0.92339 1.22059 0.99868 0.99152 0.98764 0.91560 0.92277 0.92497 0.91036 0.91183 0.88656 0.90542 0.92504 0.90765 0.91040 0.94905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.08 37.16 0.37 -2.26 16 2 C 0.13 1.97 6.09 -4.04 -0.02 1.94 16 3 N -0.61 -11.60 2.79 -164.89 -0.46 -12.06 16 4 C 0.53 11.75 8.02 -10.86 -0.09 11.66 16 5 O -0.56 -13.81 17.59 5.56 0.10 -13.72 16 6 C -0.17 -3.58 5.36 -26.74 -0.14 -3.72 16 7 C 0.01 0.16 2.39 -90.14 -0.22 -0.05 16 8 H 0.06 1.18 6.63 -51.93 -0.34 0.83 16 9 C -0.51 -13.23 8.29 -34.44 -0.29 -13.52 16 10 H 0.09 2.41 5.64 -52.48 -0.30 2.12 16 11 C 0.08 2.04 5.41 -17.82 -0.10 1.94 16 12 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 13 Si 0.87 20.39 25.60 -169.99 -4.35 16.04 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 16 H -0.26 -5.70 6.29 56.52 0.36 -5.35 16 17 C 0.14 2.55 3.82 -67.01 -0.26 2.30 16 18 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.14 -2.44 6.87 37.16 0.26 -2.18 16 20 H 0.07 1.04 5.80 -51.93 -0.30 0.74 16 21 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.07 1.13 7.92 -51.93 -0.41 0.72 16 24 H 0.07 0.91 8.11 -51.93 -0.42 0.48 16 25 H 0.10 2.24 6.38 -51.93 -0.33 1.91 16 26 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.07 1.45 5.02 -51.93 -0.26 1.19 16 29 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 30 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16 LS Contribution 239.25 15.07 3.61 3.61 Total: -1.00 -30.08 239.25 -4.89 -34.97 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.07 Total: 0.47 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.48 Total: -3.88 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.31 Total: -37.50 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.10 Total: -13.72 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.35 Total: 16.04 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.08 -4.89 -34.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917369.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.202 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds