Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34422 * 124.34544 * 90.02785 * 3 2 1 5 5 O 1.21281 * 124.94496 * 0.38603 * 4 3 2 6 6 C 1.51277 * 110.11227 * 180.40611 * 4 3 2 7 7 C 1.54633 * 104.19925 * 16.25083 * 6 4 3 8 8 H 1.09007 * 110.96812 * 93.31641 * 7 6 4 9 9 C 1.50696 * 110.97281 * 217.08362 * 7 6 4 10 10 H 1.08002 * 120.00014 * 118.54702 * 9 7 6 11 11 C 1.37875 * 119.99950 * 298.54849 * 9 7 6 12 12 N 1.31515 * 119.99994 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 120.00099 * 359.97438 * 11 9 7 14 14 H 1.48505 * 109.46831 * 90.00526 * 13 11 9 15 15 H 1.48502 * 109.47408 * 210.00119 * 13 11 9 16 16 H 1.48497 * 109.47078 * 330.00670 * 13 11 9 17 17 C 1.46758 * 124.34868 * 269.72411 * 3 2 1 18 18 H 1.08995 * 110.24981 * 281.98487 * 17 3 2 19 19 C 1.53004 * 110.24802 * 43.99065 * 17 3 2 20 20 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 21 21 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 24 24 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 25 25 H 1.08995 * 110.48722 * 134.93161 * 6 4 3 26 26 H 1.09002 * 110.48778 * 257.57286 * 6 4 3 27 27 H 0.97004 * 119.99991 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.47273 * 58.54037 * 19 17 3 29 29 H 1.08992 * 109.47374 * 178.54284 * 19 17 3 30 30 H 1.09006 * 109.46417 * 298.54191 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2716 2.0961 1.1099 5 8 2.1355 1.6894 2.2443 6 6 2.7507 3.4820 0.7379 7 6 2.3526 3.6347 -0.7484 8 1 1.3777 4.1129 -0.8440 9 6 3.4030 4.3989 -1.5124 10 1 3.9216 3.9288 -2.3348 11 6 3.7021 5.6983 -1.1613 12 7 4.6191 6.3650 -1.8276 13 14 2.8047 6.5117 0.2609 14 1 3.5477 6.2625 1.5223 15 1 2.7164 7.9742 0.0190 16 1 1.4366 5.9448 0.3719 17 6 2.2999 2.1600 -1.2117 18 1 3.2574 1.8613 -1.6381 19 6 1.1799 1.9685 -2.2363 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.2497 4.2349 1.3464 26 1 3.8322 3.5554 0.8527 27 1 4.8293 7.2793 -1.5809 28 1 0.2308 2.2796 -1.7997 29 1 1.3885 2.5718 -3.1197 30 1 1.1225 0.9174 -2.5195 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917372.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = -42.849396 kcal Electronic energy + Delta-G solvation = -13066.364540 eV Core-core repulsion = 10861.323961 eV Total energy + Delta-G solvation = -2205.040579 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.88935 -36.23165 -34.06412 -32.09617 -30.05447 -29.31398 -25.82038 -23.10170 -22.58963 -20.19573 -18.80679 -16.87737 -15.98790 -15.61355 -14.80545 -14.14721 -13.59913 -13.41393 -13.08818 -12.99584 -12.49134 -12.32064 -12.12150 -11.67246 -11.27251 -10.97330 -10.86991 -10.65425 -10.54765 -10.07706 -9.73315 -9.39887 -8.95253 -8.65241 -8.18650 -6.19783 -4.21903 3.20889 3.24638 3.32991 3.34352 3.58599 4.31862 5.03897 5.10020 5.30878 5.39302 5.51509 5.56474 5.66190 5.82241 5.91398 5.96577 6.08392 6.24098 6.30138 6.34743 6.46046 6.62677 6.74315 7.14405 7.26137 7.53067 7.73515 8.35252 8.79492 8.83145 9.41189 10.92429 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045656 B = 0.012822 C = 0.011128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.131940 B = 2183.220226 C = 2515.545014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.618 5.618 4 C 0.520 3.480 5 O -0.560 6.560 6 C -0.168 4.168 7 C 0.016 3.984 8 H 0.048 0.952 9 C -0.515 4.515 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.894 5.894 13 Si 0.873 3.127 14 H -0.273 1.273 15 H -0.290 1.290 16 H -0.264 1.264 17 C 0.138 3.862 18 H 0.080 0.920 19 C -0.151 4.151 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.266 0.734 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -8.511 0.404 10.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.351 5.351 4 C 0.309 3.691 5 O -0.440 6.440 6 C -0.208 4.208 7 C -0.003 4.003 8 H 0.066 0.934 9 C -0.553 4.553 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.531 5.531 13 Si 0.701 3.299 14 H -0.199 1.199 15 H -0.217 1.217 16 H -0.189 1.189 17 C 0.035 3.965 18 H 0.098 0.902 19 C -0.208 4.208 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.486 -8.624 0.957 10.833 hybrid contribution -0.382 0.554 0.720 0.986 sum -6.868 -8.069 1.678 10.728 Atomic orbital electron populations 1.22267 0.96367 1.01586 1.02713 1.21178 0.94027 0.82569 1.02242 1.48575 1.65247 1.13070 1.08249 1.21301 0.75400 0.88524 0.83839 1.90606 1.55257 1.76459 1.21635 1.22991 1.03619 0.93048 1.01117 1.20260 0.98768 0.91121 0.90193 0.93435 1.20810 1.20007 0.97489 1.16950 0.90165 1.24936 0.94447 0.96965 0.96214 1.69879 1.31370 1.11341 1.40469 0.87022 0.81166 0.78518 0.83190 1.19869 1.21664 1.18895 1.21923 0.97862 0.92545 0.84132 0.90210 1.22083 0.98420 1.00735 0.99609 0.92529 0.91924 0.92160 0.90856 0.90820 0.90351 0.87569 0.92377 0.92721 0.90724 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.09 37.16 0.38 -1.83 16 2 C 0.12 1.77 5.93 -4.04 -0.02 1.75 16 3 N -0.62 -11.21 2.79 -164.77 -0.46 -11.67 16 4 C 0.52 11.04 8.02 -10.86 -0.09 10.95 16 5 O -0.56 -13.17 17.59 5.56 0.10 -13.07 16 6 C -0.17 -3.66 4.67 -26.74 -0.12 -3.79 16 7 C 0.02 0.35 2.04 -90.04 -0.18 0.16 16 8 H 0.05 1.05 7.19 -51.93 -0.37 0.68 16 9 C -0.51 -13.25 9.00 -34.44 -0.31 -13.56 16 10 H 0.08 2.21 7.90 -52.49 -0.41 1.79 16 11 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 12 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 13 Si 0.87 20.74 24.73 -169.99 -4.20 16.53 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 16 H -0.26 -6.02 6.41 56.52 0.36 -5.66 16 17 C 0.14 2.53 3.46 -66.91 -0.23 2.30 16 18 H 0.08 1.50 7.79 -51.93 -0.40 1.10 16 19 C -0.15 -2.30 7.87 37.16 0.29 -2.01 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.78 6.00 -51.93 -0.31 0.47 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.90 7.90 -51.93 -0.41 0.49 16 24 H 0.07 1.10 7.92 -51.93 -0.41 0.69 16 25 H 0.08 1.72 5.81 -51.93 -0.30 1.42 16 26 H 0.11 2.38 7.89 -51.93 -0.41 1.97 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.05 0.82 7.41 -51.93 -0.38 0.44 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.61 7.35 -51.93 -0.38 0.23 16 LS Contribution 242.13 15.07 3.65 3.65 Total: -1.00 -29.56 242.13 -4.78 -34.34 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -4.25 Total: -0.63 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.39 Total: -4.02 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.31 Total: -36.80 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.10 Total: -13.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.20 Total: 16.53 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.56 -4.78 -34.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917372.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.509 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds