Wall clock time and date at job start Mon Mar 30 2020 02:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.34422 * 124.34544 * 90.02785 * 3 2 1 5 5 O 1.21281 * 124.94496 * 0.38603 * 4 3 2 6 6 C 1.51277 * 110.11227 * 180.40611 * 4 3 2 7 7 C 1.54633 * 104.19925 * 16.25083 * 6 4 3 8 8 H 1.09007 * 110.96812 * 93.31641 * 7 6 4 9 9 C 1.50696 * 110.97281 * 217.08362 * 7 6 4 10 10 H 1.08002 * 120.00014 * 118.54702 * 9 7 6 11 11 C 1.37875 * 119.99950 * 298.54849 * 9 7 6 12 12 N 1.31515 * 119.99994 * 179.97438 * 11 9 7 13 13 Si 1.86799 * 120.00099 * 359.97438 * 11 9 7 14 14 H 1.48505 * 109.46831 * 90.00526 * 13 11 9 15 15 H 1.48502 * 109.47408 * 210.00119 * 13 11 9 16 16 H 1.48497 * 109.47078 * 330.00670 * 13 11 9 17 17 C 1.46758 * 124.34868 * 269.72411 * 3 2 1 18 18 H 1.08995 * 110.24981 * 281.98487 * 17 3 2 19 19 C 1.53004 * 110.24802 * 43.99065 * 17 3 2 20 20 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 21 21 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 22 22 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 24 24 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 25 25 H 1.08995 * 110.48722 * 134.93161 * 6 4 3 26 26 H 1.09002 * 110.48778 * 257.57286 * 6 4 3 27 27 H 0.97004 * 119.99991 * 179.97438 * 12 11 9 28 28 H 1.08999 * 109.47273 * 58.54037 * 19 17 3 29 29 H 1.08992 * 109.47374 * 178.54284 * 19 17 3 30 30 H 1.09006 * 109.46417 * 298.54191 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2716 2.0961 1.1099 5 8 2.1355 1.6894 2.2443 6 6 2.7507 3.4820 0.7379 7 6 2.3526 3.6347 -0.7484 8 1 1.3777 4.1129 -0.8440 9 6 3.4030 4.3989 -1.5124 10 1 3.9216 3.9288 -2.3348 11 6 3.7021 5.6983 -1.1613 12 7 4.6191 6.3650 -1.8276 13 14 2.8047 6.5117 0.2609 14 1 3.5477 6.2625 1.5223 15 1 2.7164 7.9742 0.0190 16 1 1.4366 5.9448 0.3719 17 6 2.2999 2.1600 -1.2117 18 1 3.2574 1.8613 -1.6381 19 6 1.1799 1.9685 -2.2363 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.2497 4.2349 1.3464 26 1 3.8322 3.5554 0.8527 27 1 4.8293 7.2793 -1.5809 28 1 0.2308 2.2796 -1.7997 29 1 1.3885 2.5718 -3.1197 30 1 1.1225 0.9174 -2.5195 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917372.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:28 Heat of formation + Delta-G solvation = -62.394071 kcal Electronic energy + Delta-G solvation = -13067.212061 eV Core-core repulsion = 10861.323961 eV Total energy + Delta-G solvation = -2205.888100 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.48498 -37.90471 -35.66674 -33.92556 -31.48639 -30.79789 -27.62736 -24.53598 -24.03331 -21.89637 -20.37669 -18.79299 -17.56271 -17.23946 -16.39152 -15.94404 -15.16847 -14.87974 -14.75820 -14.60184 -14.04153 -13.63813 -13.32470 -13.02573 -12.81458 -12.70881 -12.48257 -12.40358 -11.83069 -11.80240 -11.44903 -11.24466 -10.83493 -10.61072 -9.66299 -8.30077 -6.34666 1.34791 1.38892 1.44525 1.56143 2.14089 2.32717 3.04275 3.56536 3.83393 4.13774 4.19616 4.32821 4.33612 4.52681 4.54682 4.64272 4.80781 4.84170 4.97374 5.05891 5.11627 5.24890 5.38314 5.46631 5.60688 5.77507 6.13025 6.29353 6.71948 7.19665 7.31994 8.85385 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045656 B = 0.012822 C = 0.011128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.131940 B = 2183.220226 C = 2515.545014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.113 3.887 3 N -0.607 5.607 4 C 0.517 3.483 5 O -0.587 6.587 6 C -0.169 4.169 7 C 0.013 3.987 8 H 0.052 0.948 9 C -0.507 4.507 10 H 0.053 0.947 11 C 0.027 3.973 12 N -0.940 5.940 13 Si 0.924 3.076 14 H -0.270 1.270 15 H -0.291 1.291 16 H -0.246 1.246 17 C 0.141 3.859 18 H 0.075 0.925 19 C -0.143 4.143 20 H 0.033 0.967 21 H 0.069 0.931 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.267 0.733 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 -9.967 0.362 12.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.007 4.007 3 N -0.339 5.339 4 C 0.306 3.694 5 O -0.469 6.469 6 C -0.209 4.209 7 C -0.006 4.006 8 H 0.070 0.930 9 C -0.545 4.545 10 H 0.071 0.929 11 C -0.172 4.172 12 N -0.580 5.580 13 Si 0.749 3.251 14 H -0.196 1.196 15 H -0.218 1.218 16 H -0.170 1.170 17 C 0.039 3.961 18 H 0.093 0.907 19 C -0.201 4.201 20 H 0.052 0.948 21 H 0.088 0.912 22 H 0.109 0.891 23 H 0.122 0.878 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.146 -10.117 0.891 13.019 hybrid contribution 0.171 0.930 0.666 1.157 sum -7.975 -9.187 1.557 12.265 Atomic orbital electron populations 1.22215 0.94705 1.03408 1.01933 1.21547 0.95362 0.80271 1.03568 1.48635 1.63966 1.14319 1.06990 1.21112 0.75662 0.88486 0.84158 1.90589 1.56755 1.76871 1.22690 1.22903 1.02982 0.94137 1.00912 1.20183 0.97370 0.93192 0.89877 0.93026 1.21018 1.19980 0.97451 1.16018 0.92893 1.25648 0.95221 0.97838 0.98508 1.70000 1.33519 1.11861 1.42591 0.86190 0.80991 0.77494 0.80384 1.19591 1.21787 1.17022 1.21828 0.99279 0.90226 0.84793 0.90699 1.22028 0.97018 1.02852 0.98187 0.94753 0.91186 0.89105 0.87751 0.91329 0.90452 0.88751 0.92398 0.92182 0.91102 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.09 71.98 0.73 -2.89 16 2 C 0.11 2.89 5.93 86.38 0.51 3.40 16 3 N -0.61 -20.58 2.79 -793.80 -2.22 -22.80 16 4 C 0.52 21.27 8.02 87.90 0.70 21.98 16 5 O -0.59 -27.04 17.59 -3.03 -0.05 -27.09 16 6 C -0.17 -7.25 4.67 30.59 0.14 -7.10 16 7 C 0.01 0.56 2.04 -10.42 -0.02 0.54 16 8 H 0.05 2.18 7.19 -2.38 -0.02 2.17 16 9 C -0.51 -26.18 9.00 25.60 0.23 -25.95 16 10 H 0.05 2.97 7.90 -2.91 -0.02 2.95 16 11 C 0.03 1.45 5.46 84.65 0.46 1.91 16 12 N -0.94 -55.59 13.96 21.45 0.30 -55.29 16 13 Si 0.92 42.49 24.73 68.60 1.70 44.18 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.25 -10.53 6.41 99.48 0.64 -9.89 16 17 C 0.14 4.89 3.46 45.51 0.16 5.05 16 18 H 0.08 2.70 7.79 -2.39 -0.02 2.68 16 19 C -0.14 -3.89 7.87 71.98 0.57 -3.32 16 20 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 21 H 0.07 1.44 6.00 -2.39 -0.01 1.43 16 22 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.10 2.06 7.90 -2.38 -0.02 2.04 16 24 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 25 H 0.08 3.30 5.81 -2.39 -0.01 3.29 16 26 H 0.09 4.24 7.89 -2.39 -0.02 4.22 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.06 1.58 7.41 -2.39 -0.02 1.57 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.08 1.67 7.35 -2.38 -0.02 1.65 16 Total: -1.00 -63.45 242.13 4.25 -59.20 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.04 Total: 8.18 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 3.48 Total: -6.38 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.92 Total: -78.09 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.70 Total: 44.18 kcal Total: -63.45 4.25 -59.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917372.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.191 kcal (2) G-P(sol) polarization free energy of solvation -63.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds