Wall clock time and date at job start Mon Mar 30 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46780 * 2 1 4 4 H 1.09002 * 109.29887 * 305.00178 * 3 2 1 5 5 N 1.45758 * 109.30057 * 64.58888 * 3 2 1 6 6 C 1.33085 * 124.30989 * 100.80577 * 5 3 2 7 7 O 1.21279 * 118.32779 * 182.40485 * 6 5 3 8 8 C 1.50173 * 123.42601 * 2.60627 * 6 5 3 9 9 C 1.53062 * 109.89264 * 342.23380 * 8 6 5 10 10 C 1.52921 * 109.30181 * 185.41862 * 3 2 1 11 11 H 1.08993 * 109.60410 * 170.89340 * 10 3 2 12 12 C 1.50697 * 109.60066 * 50.56678 * 10 3 2 13 13 H 1.07997 * 120.00183 * 0.02562 * 12 10 3 14 14 C 1.37878 * 119.99957 * 180.02562 * 12 10 3 15 15 N 1.31512 * 120.00382 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 119.99970 * 0.02562 * 14 12 10 17 17 H 1.48494 * 109.47322 * 90.00009 * 16 14 12 18 18 H 1.48504 * 109.47030 * 210.00411 * 16 14 12 19 19 H 1.48507 * 109.47030 * 329.99807 * 16 14 12 20 20 H 1.09007 * 109.47214 * 179.97438 * 1 2 3 21 21 H 1.09006 * 109.47326 * 299.99497 * 1 2 3 22 22 H 1.08992 * 109.47779 * 59.99636 * 1 2 3 23 23 H 1.08998 * 109.47059 * 240.00475 * 2 1 3 24 24 H 1.08993 * 109.47336 * 120.00068 * 2 1 3 25 25 H 0.97007 * 117.94038 * 281.02836 * 5 3 2 26 26 H 1.08999 * 109.40322 * 222.10376 * 8 6 5 27 27 H 1.09001 * 109.39951 * 102.36239 * 8 6 5 28 28 H 1.08994 * 109.67869 * 289.16539 * 9 8 6 29 29 H 1.09002 * 109.67629 * 168.62846 * 9 8 6 30 30 H 0.97004 * 120.00401 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6036 1.9789 -0.8427 5 7 1.6439 2.0935 1.2426 6 6 2.4520 2.2771 2.2839 7 8 1.9961 2.7932 3.2822 8 6 3.9010 1.8826 2.2862 9 6 4.1708 0.8847 1.1574 10 6 3.5630 1.4403 -0.1363 11 1 3.9171 2.4582 -0.2990 12 6 3.9650 0.5728 -1.3011 13 1 3.2091 0.0720 -1.8877 14 6 5.2980 0.4184 -1.6179 15 7 5.6490 -0.3391 -2.6341 16 14 6.6056 1.2840 -0.6029 17 1 7.0259 0.4041 0.5171 18 1 7.7788 1.5870 -1.4616 19 1 6.0517 2.5493 -0.0573 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8898 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 0.7306 2.4116 1.3180 26 1 4.1496 1.4231 3.2428 27 1 4.5179 2.7694 2.1407 28 1 3.7106 -0.0738 1.3970 29 1 5.2458 0.7549 1.0315 30 1 6.5868 -0.4474 -2.8572 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917553.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:18 Heat of formation + Delta-G solvation = -71.605182 kcal Electronic energy + Delta-G solvation = -13178.205177 eV Core-core repulsion = 10971.917653 eV Total energy + Delta-G solvation = -2206.287524 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.43222 -38.38423 -35.16814 -33.97420 -32.98866 -30.55441 -26.71420 -25.10588 -23.27668 -22.77400 -19.63505 -18.53167 -18.08232 -17.18274 -16.45057 -16.24907 -15.34794 -15.06823 -14.92957 -14.66059 -14.14823 -13.79862 -13.44941 -12.72152 -12.64344 -12.58128 -12.26873 -11.92981 -11.64134 -11.54383 -11.30581 -10.93495 -10.78638 -10.50766 -9.95592 -8.23612 -6.27232 1.34477 1.41498 1.49071 1.65025 2.36259 2.45181 3.10967 3.69233 3.99509 4.03325 4.08960 4.29729 4.44498 4.55946 4.68449 4.78014 4.91919 4.95507 5.04807 5.14377 5.30641 5.38731 5.55188 5.62132 5.66611 5.92305 6.25980 6.49178 6.80932 7.26315 7.38386 8.90982 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.035420 B = 0.015568 C = 0.011487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.315700 B = 1798.156136 C = 2436.976951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C 0.158 3.842 4 H 0.089 0.911 5 N -0.696 5.696 6 C 0.525 3.475 7 O -0.610 6.610 8 C -0.137 4.137 9 C -0.126 4.126 10 C 0.003 3.997 11 H 0.031 0.969 12 C -0.503 4.503 13 H 0.060 0.940 14 C 0.019 3.981 15 N -0.945 5.945 16 Si 0.932 3.068 17 H -0.266 1.266 18 H -0.306 1.306 19 H -0.245 1.245 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.401 0.599 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 2.748 6.124 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C 0.054 3.946 4 H 0.107 0.893 5 N -0.345 5.345 6 C 0.313 3.687 7 O -0.494 6.494 8 C -0.177 4.177 9 C -0.163 4.163 10 C -0.016 4.016 11 H 0.049 0.951 12 C -0.542 4.542 13 H 0.078 0.922 14 C -0.179 4.179 15 N -0.585 5.585 16 Si 0.760 3.240 17 H -0.192 1.192 18 H -0.234 1.234 19 H -0.169 1.169 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.237 0.763 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.473 2.861 6.486 8.956 hybrid contribution 0.684 0.133 -0.073 0.701 sum -4.788 2.993 6.414 8.546 Atomic orbital electron populations 1.21769 0.94637 1.02108 1.01821 1.21938 0.96305 0.95889 1.02554 1.20913 0.95713 0.93534 0.84418 0.89334 1.45522 1.14912 1.58680 1.15400 1.20240 0.89640 0.76937 0.81880 1.90673 1.77254 1.47703 1.33807 1.21717 0.92337 1.01805 1.01816 1.22064 1.00562 0.98855 0.94846 1.19425 0.92297 0.96695 0.93221 0.95054 1.21174 0.92620 1.28079 1.12290 0.92228 1.25716 1.00875 0.95488 0.95828 1.70009 1.17725 1.40712 1.30047 0.86091 0.78659 0.80805 0.78445 1.19218 1.23383 1.16886 0.92253 0.92590 0.92066 0.91079 0.92797 0.76313 0.87357 0.88150 0.90996 0.93140 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.78 71.98 0.70 -2.95 16 2 C -0.13 -4.13 5.04 30.59 0.15 -3.98 16 3 C 0.16 5.29 2.86 45.11 0.13 5.42 16 4 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 5 N -0.70 -21.54 4.60 -446.98 -2.05 -23.59 16 6 C 0.52 18.29 7.71 87.75 0.68 18.97 16 7 O -0.61 -24.54 17.78 -3.03 -0.05 -24.59 16 8 C -0.14 -4.50 6.03 29.70 0.18 -4.32 16 9 C -0.13 -4.70 4.76 30.73 0.15 -4.56 16 10 C 0.00 0.12 1.53 -11.45 -0.02 0.10 16 11 H 0.03 1.31 7.17 -2.39 -0.02 1.30 16 12 C -0.50 -25.12 8.36 25.60 0.21 -24.91 16 13 H 0.06 3.22 6.31 -2.91 -0.02 3.20 16 14 C 0.02 0.99 5.45 84.66 0.46 1.45 16 15 N -0.94 -55.26 13.96 21.45 0.30 -54.96 16 16 Si 0.93 41.57 24.46 68.60 1.68 43.24 16 17 H -0.27 -11.32 6.81 99.48 0.68 -10.65 16 18 H -0.31 -14.04 7.11 99.48 0.71 -13.33 16 19 H -0.25 -10.04 6.53 99.48 0.65 -9.39 16 20 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 21 H 0.06 1.29 7.38 -2.38 -0.02 1.27 16 22 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 2.67 5.87 -2.39 -0.01 2.66 16 24 H 0.05 1.78 6.73 -2.39 -0.02 1.76 16 25 H 0.40 10.77 8.30 -92.70 -0.77 10.00 16 26 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 27 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.07 2.64 6.47 -2.39 -0.02 2.62 16 29 H 0.05 2.00 3.38 -2.39 -0.01 2.00 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -60.34 233.40 2.81 -57.53 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.29 Total: 17.15 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 2.65 Total: -14.77 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.76 Total: -78.56 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.68 Total: 43.24 kcal Total: -60.34 2.81 -57.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917553.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.074 kcal (2) G-P(sol) polarization free energy of solvation -60.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds