Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46896 * 2 1 4 4 H 1.09002 * 109.30047 * 54.99869 * 3 2 1 5 5 N 1.45753 * 109.13352 * 295.51436 * 3 2 1 6 6 C 1.33356 * 124.10748 * 258.87449 * 5 3 2 7 7 O 1.21279 * 118.24568 * 177.75545 * 6 5 3 8 8 C 1.50177 * 123.50612 * 357.76897 * 6 5 3 9 9 C 1.53064 * 109.88934 * 17.58859 * 8 6 5 10 10 C 1.52919 * 109.30109 * 174.58095 * 3 2 1 11 11 H 1.09004 * 109.60517 * 189.10623 * 10 3 2 12 12 C 1.50694 * 109.60444 * 309.59527 * 10 3 2 13 13 H 1.07996 * 120.00150 * 0.02562 * 12 10 3 14 14 C 1.37878 * 120.00237 * 179.97438 * 12 10 3 15 15 N 1.31515 * 119.99821 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00168 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47437 * 120.00247 * 16 14 12 19 19 H 1.48504 * 109.46763 * 239.99960 * 16 14 12 20 20 H 1.09002 * 109.47276 * 300.00036 * 1 2 3 21 21 H 1.09000 * 109.46982 * 60.00265 * 1 2 3 22 22 H 1.08999 * 109.46691 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47755 * 239.99976 * 2 1 3 24 24 H 1.08997 * 109.47568 * 119.99279 * 2 1 3 25 25 H 0.97001 * 117.95055 * 78.86683 * 5 3 2 26 26 H 1.08997 * 109.40041 * 257.45797 * 8 6 5 27 27 H 1.09002 * 109.32918 * 137.67289 * 8 6 5 28 28 H 1.09003 * 109.67100 * 191.36373 * 9 8 6 29 29 H 1.08999 * 109.67644 * 70.83875 * 9 8 6 30 30 H 0.97004 * 120.00117 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6037 1.9789 0.8427 5 7 1.6400 2.0907 -1.2427 6 6 2.4521 2.2771 -2.2840 7 8 1.9960 2.7925 -3.2825 8 6 3.9011 1.8826 -2.2862 9 6 4.1709 0.8847 -1.1573 10 6 3.5631 1.4403 0.1363 11 1 3.9173 2.4582 0.2990 12 6 3.9654 0.5696 1.2986 13 1 3.2096 0.0663 1.8833 14 6 5.2984 0.4146 1.6150 15 7 6.2188 1.0263 0.9021 16 14 5.7971 -0.6653 3.0553 17 1 4.5821 -1.2365 3.6897 18 1 6.6672 -1.7665 2.5705 19 1 6.5385 0.1494 4.0513 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 0.7257 2.4062 -1.3172 26 1 4.5180 2.7693 -2.1407 27 1 4.1483 1.4225 -3.2429 28 1 5.2458 0.7548 -1.0315 29 1 3.7106 -0.0738 -1.3970 30 1 7.1566 0.9176 1.1249 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = -59.996448 kcal Electronic energy + Delta-G solvation = -13103.297694 eV Core-core repulsion = 10897.513562 eV Total energy + Delta-G solvation = -2205.784131 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64259 -36.59358 -33.40812 -32.01928 -31.13671 -28.58546 -24.84163 -23.39894 -21.63410 -21.11987 -17.88893 -16.49607 -15.94506 -15.49922 -14.62661 -14.49867 -13.65401 -13.42183 -13.20687 -12.70036 -12.53160 -11.87803 -11.26943 -11.11659 -10.98445 -10.86825 -10.58623 -10.54536 -10.17777 -9.65874 -9.58393 -9.01141 -8.80467 -8.51679 -8.25111 -6.12555 -4.19431 3.22622 3.31900 3.33734 3.33882 4.06071 4.35289 5.18315 5.47535 5.51656 5.65372 5.73870 5.94865 6.08879 6.16133 6.29141 6.31381 6.46341 6.58493 6.73645 6.90700 7.01007 7.12188 7.45208 7.60016 7.77185 7.88407 8.03725 8.30022 8.82025 8.91758 9.46095 10.93904 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.012860 C = 0.010283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.186631 B = 2176.790773 C = 2722.187158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.132 4.132 3 C 0.141 3.859 4 H 0.069 0.931 5 N -0.711 5.711 6 C 0.523 3.477 7 O -0.591 6.591 8 C -0.135 4.135 9 C -0.118 4.118 10 C 0.043 3.957 11 H 0.034 0.966 12 C -0.513 4.513 13 H 0.065 0.935 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 H 0.049 0.951 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.089 0.911 25 H 0.384 0.616 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.043 0.957 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 -1.543 -0.207 5.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C 0.037 3.963 4 H 0.087 0.913 5 N -0.360 5.360 6 C 0.312 3.688 7 O -0.474 6.474 8 C -0.175 4.175 9 C -0.156 4.156 10 C 0.024 3.976 11 H 0.053 0.947 12 C -0.551 4.551 13 H 0.083 0.917 14 C -0.139 4.139 15 N -0.525 5.525 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.217 0.783 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.061 0.939 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.328 -1.346 -0.688 5.538 hybrid contribution 0.014 -0.470 0.817 0.943 sum -5.314 -1.817 0.129 5.618 Atomic orbital electron populations 1.21846 0.97606 1.00810 1.00812 1.22035 0.93660 0.97623 1.03692 1.21273 0.99541 0.91926 0.83537 0.91253 1.45739 1.13974 1.59813 1.16450 1.20498 0.89717 0.76839 0.81764 1.90643 1.77092 1.46561 1.33073 1.21705 0.91440 1.02428 1.01917 1.21826 1.05507 0.95375 0.92846 1.18955 0.86649 0.97877 0.94108 0.94747 1.21121 0.92069 1.29007 1.12889 0.91721 1.24959 0.96690 0.95710 0.96500 1.69879 1.00701 1.42789 1.39122 0.86530 0.78662 0.80330 0.82452 1.19708 1.21024 1.21053 0.93206 0.93607 0.93431 0.92159 0.89261 0.78254 0.89169 0.90213 0.87921 0.93855 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.78 37.16 0.36 -1.81 16 2 C -0.13 -2.28 5.03 -26.73 -0.13 -2.41 16 3 C 0.14 2.65 2.87 -68.37 -0.20 2.45 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 N -0.71 -12.99 4.60 -54.85 -0.25 -13.24 16 6 C 0.52 10.75 7.71 -11.87 -0.09 10.65 16 7 O -0.59 -13.62 17.78 5.56 0.10 -13.52 16 8 C -0.14 -2.69 6.03 -28.10 -0.17 -2.86 16 9 C -0.12 -2.56 5.12 -26.52 -0.14 -2.69 16 10 C 0.04 0.96 1.95 -91.64 -0.18 0.78 16 11 H 0.03 0.86 8.12 -51.93 -0.42 0.44 16 12 C -0.51 -12.50 7.78 -34.44 -0.27 -12.77 16 13 H 0.06 1.53 6.05 -52.49 -0.32 1.21 16 14 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 15 N -0.89 -23.52 11.37 55.43 0.63 -22.89 16 16 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.04 0.63 7.36 -51.93 -0.38 0.25 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.10 6.73 -51.93 -0.35 0.75 16 24 H 0.09 1.64 5.86 -51.93 -0.30 1.33 16 25 H 0.38 6.29 8.28 -40.82 -0.34 5.95 16 26 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.10 2.50 6.02 -51.93 -0.31 2.19 16 29 H 0.04 0.92 6.47 -51.93 -0.34 0.58 16 30 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 240.10 15.07 3.62 3.62 Total: -1.00 -27.31 240.10 -5.84 -33.16 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.01 Total: 5.22 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.91 Total: -7.15 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.38 Total: -36.14 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.10 Total: -13.52 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -27.31 -5.84 -33.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.841 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds