Wall clock time and date at job start Mon Mar 30 2020 02:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46896 * 2 1 4 4 H 1.09002 * 109.30047 * 54.99869 * 3 2 1 5 5 N 1.45753 * 109.13352 * 295.51436 * 3 2 1 6 6 C 1.33356 * 124.10748 * 258.87449 * 5 3 2 7 7 O 1.21279 * 118.24568 * 177.75545 * 6 5 3 8 8 C 1.50177 * 123.50612 * 357.76897 * 6 5 3 9 9 C 1.53064 * 109.88934 * 17.58859 * 8 6 5 10 10 C 1.52919 * 109.30109 * 174.58095 * 3 2 1 11 11 H 1.09004 * 109.60517 * 189.10623 * 10 3 2 12 12 C 1.50694 * 109.60444 * 309.59527 * 10 3 2 13 13 H 1.07996 * 120.00150 * 0.02562 * 12 10 3 14 14 C 1.37878 * 120.00237 * 179.97438 * 12 10 3 15 15 N 1.31515 * 119.99821 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00168 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47437 * 120.00247 * 16 14 12 19 19 H 1.48504 * 109.46763 * 239.99960 * 16 14 12 20 20 H 1.09002 * 109.47276 * 300.00036 * 1 2 3 21 21 H 1.09000 * 109.46982 * 60.00265 * 1 2 3 22 22 H 1.08999 * 109.46691 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47755 * 239.99976 * 2 1 3 24 24 H 1.08997 * 109.47568 * 119.99279 * 2 1 3 25 25 H 0.97001 * 117.95055 * 78.86683 * 5 3 2 26 26 H 1.08997 * 109.40041 * 257.45797 * 8 6 5 27 27 H 1.09002 * 109.32918 * 137.67289 * 8 6 5 28 28 H 1.09003 * 109.67100 * 191.36373 * 9 8 6 29 29 H 1.08999 * 109.67644 * 70.83875 * 9 8 6 30 30 H 0.97004 * 120.00117 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6037 1.9789 0.8427 5 7 1.6400 2.0907 -1.2427 6 6 2.4521 2.2771 -2.2840 7 8 1.9960 2.7925 -3.2825 8 6 3.9011 1.8826 -2.2862 9 6 4.1709 0.8847 -1.1573 10 6 3.5631 1.4403 0.1363 11 1 3.9173 2.4582 0.2990 12 6 3.9654 0.5696 1.2986 13 1 3.2096 0.0663 1.8833 14 6 5.2984 0.4146 1.6150 15 7 6.2188 1.0263 0.9021 16 14 5.7971 -0.6653 3.0553 17 1 4.5821 -1.2365 3.6897 18 1 6.6672 -1.7665 2.5705 19 1 6.5385 0.1494 4.0513 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 0.7257 2.4062 -1.3172 26 1 4.5180 2.7693 -2.1407 27 1 4.1483 1.4225 -3.2429 28 1 5.2458 0.7548 -1.0315 29 1 3.7106 -0.0738 -1.3970 30 1 7.1566 0.9176 1.1249 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917556.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:20 Heat of formation + Delta-G solvation = -77.032441 kcal Electronic energy + Delta-G solvation = -13104.036430 eV Core-core repulsion = 10897.513562 eV Total energy + Delta-G solvation = -2206.522867 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.28707 -38.26780 -35.16375 -33.62264 -32.77310 -30.22937 -26.58851 -25.03944 -23.17441 -22.75165 -19.59382 -18.18005 -17.73177 -17.11530 -16.41913 -16.15778 -15.15692 -14.93627 -14.79909 -14.48759 -14.02299 -13.37193 -13.03492 -12.76281 -12.64104 -12.49981 -12.16136 -12.13418 -11.78978 -11.34685 -11.24697 -10.81957 -10.54155 -10.36918 -9.86947 -8.05775 -6.17223 1.46200 1.50704 1.59160 1.68692 2.43117 2.57650 3.24502 3.86036 4.10432 4.24021 4.30688 4.44294 4.51924 4.74518 4.78458 4.91481 5.05133 5.16805 5.29628 5.34107 5.39020 5.56919 5.68986 5.91211 5.98022 6.06458 6.27171 6.54515 6.92434 7.31700 7.51118 9.00222 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040152 B = 0.012860 C = 0.010283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.186631 B = 2176.790773 C = 2722.187158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.148 3.852 4 H 0.083 0.917 5 N -0.697 5.697 6 C 0.523 3.477 7 O -0.616 6.616 8 C -0.130 4.130 9 C -0.108 4.108 10 C 0.039 3.961 11 H 0.002 0.998 12 C -0.516 4.516 13 H 0.073 0.927 14 C 0.015 3.985 15 N -0.917 5.917 16 Si 0.950 3.050 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.288 1.288 20 H 0.062 0.938 21 H 0.050 0.950 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.398 0.602 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 -2.214 0.304 7.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.044 3.956 4 H 0.101 0.899 5 N -0.346 5.346 6 C 0.312 3.688 7 O -0.500 6.500 8 C -0.170 4.170 9 C -0.146 4.146 10 C 0.020 3.980 11 H 0.021 0.979 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.184 4.184 15 N -0.556 5.556 16 Si 0.777 3.223 17 H -0.186 1.186 18 H -0.213 1.213 19 H -0.215 1.215 20 H 0.081 0.919 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.097 0.903 25 H 0.233 0.767 26 H 0.106 0.894 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.065 0.935 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.746 -2.025 -0.156 7.045 hybrid contribution 0.448 -0.245 0.671 0.843 sum -6.298 -2.270 0.515 6.715 Atomic orbital electron populations 1.21780 0.94776 1.02121 1.01694 1.21933 0.96092 0.95795 1.02633 1.21161 0.97033 0.93447 0.83976 0.89927 1.45575 1.14421 1.58964 1.15615 1.20483 0.89849 0.76674 0.81841 1.90637 1.77451 1.47907 1.34033 1.21641 0.91494 1.01917 1.01935 1.21627 1.03659 0.96024 0.93338 1.18900 0.89394 0.95719 0.94010 0.97938 1.21472 0.92197 1.28608 1.13201 0.90914 1.25665 0.97020 0.96997 0.98697 1.70009 1.00776 1.44263 1.40584 0.85623 0.78413 0.78602 0.79705 1.18552 1.21297 1.21462 0.91893 0.93139 0.92003 0.93248 0.90272 0.76666 0.89390 0.88668 0.90629 0.93483 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.78 71.98 0.70 -2.95 16 2 C -0.13 -4.08 5.03 30.60 0.15 -3.93 16 3 C 0.15 5.28 2.87 45.11 0.13 5.41 16 4 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 5 N -0.70 -24.15 4.60 -446.63 -2.06 -26.20 16 6 C 0.52 20.80 7.71 87.71 0.68 21.48 16 7 O -0.62 -27.51 17.78 -3.03 -0.05 -27.57 16 8 C -0.13 -5.12 6.03 29.71 0.18 -4.94 16 9 C -0.11 -4.71 5.12 30.73 0.16 -4.56 16 10 C 0.04 1.73 1.95 -11.45 -0.02 1.70 16 11 H 0.00 0.13 8.12 -2.38 -0.02 0.11 16 12 C -0.52 -24.89 7.78 25.60 0.20 -24.70 16 13 H 0.07 3.33 6.05 -2.91 -0.02 3.31 16 14 C 0.02 0.76 5.29 84.65 0.45 1.21 16 15 N -0.92 -49.33 11.37 21.45 0.24 -49.08 16 16 Si 0.95 40.39 29.54 68.60 2.03 42.42 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 20 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 21 H 0.05 1.22 7.36 -2.39 -0.02 1.20 16 22 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.05 1.70 6.73 -2.39 -0.02 1.68 16 24 H 0.08 2.74 5.86 -2.39 -0.01 2.72 16 25 H 0.40 11.99 8.28 -92.71 -0.77 11.23 16 26 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 27 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.08 3.75 6.02 -2.39 -0.01 3.73 16 29 H 0.05 1.97 6.47 -2.39 -0.02 1.96 16 30 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 Total: -1.00 -56.85 240.10 3.16 -53.70 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.37 Total: 18.01 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 2.62 Total: -11.27 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.81 Total: -75.29 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -56.85 3.16 -53.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917556.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.335 kcal (2) G-P(sol) polarization free energy of solvation -56.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds