Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 H 1.09001 * 109.29917 * 55.41414 * 3 2 1 5 5 N 1.45754 * 109.29940 * 296.03603 * 3 2 1 6 6 C 1.33242 * 124.06721 * 220.53171 * 5 3 2 7 7 O 1.21276 * 118.15747 * 182.29400 * 6 5 3 8 8 C 1.50178 * 123.59638 * 2.38387 * 6 5 3 9 9 C 1.53069 * 109.82098 * 342.28284 * 8 6 5 10 10 C 1.52915 * 109.30247 * 174.99592 * 3 2 1 11 11 H 1.08998 * 109.60341 * 51.31078 * 10 3 2 12 12 C 1.50702 * 109.60850 * 290.82278 * 10 3 2 13 13 H 1.08004 * 119.99528 * 0.81154 * 12 10 3 14 14 C 1.37872 * 120.00531 * 180.81130 * 12 10 3 15 15 N 1.31516 * 119.99917 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00082 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47244 * 60.00211 * 16 14 12 18 18 H 1.48503 * 109.47006 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47180 * 300.00015 * 16 14 12 20 20 H 1.08997 * 109.47414 * 300.00449 * 1 2 3 21 21 H 1.09004 * 109.46861 * 60.00374 * 1 2 3 22 22 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47556 * 240.00057 * 2 1 3 24 24 H 1.09004 * 109.46861 * 119.99626 * 2 1 3 25 25 H 0.96999 * 117.95119 * 40.61492 * 5 3 2 26 26 H 1.09002 * 109.40116 * 222.19493 * 8 6 5 27 27 H 1.09003 * 109.39968 * 102.37119 * 8 6 5 28 28 H 1.09001 * 109.66951 * 168.67826 * 9 8 6 29 29 H 1.09000 * 109.67340 * 289.20565 * 9 8 6 30 30 H 0.96995 * 120.00287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6095 1.9768 0.8469 5 7 1.6313 2.0980 -1.2360 6 6 2.4083 2.9247 -1.9347 7 8 1.9441 3.4446 -2.9271 8 6 3.8271 3.2459 -1.5615 9 6 4.0778 2.8669 -0.0999 10 6 3.5639 1.4398 0.1259 11 1 3.9917 0.7743 -0.6239 12 6 3.9568 0.9731 1.5039 13 1 3.1952 0.6919 2.2162 14 6 5.2882 0.9050 1.8553 15 7 6.2156 1.2479 0.9881 16 14 5.7749 0.3272 3.5637 17 1 5.2759 -1.0546 3.7798 18 1 7.2546 0.3437 3.6890 19 1 5.1814 1.2325 4.5803 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.7377 1.9222 -1.5699 26 1 4.0036 4.3133 -1.6942 27 1 4.5062 2.6841 -2.2029 28 1 5.1461 2.9102 0.1123 29 1 3.5450 3.5566 0.5547 30 1 7.1523 1.1997 1.2351 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709917560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = -63.740386 kcal Electronic energy + Delta-G solvation = -13006.891451 eV Core-core repulsion = 10800.944971 eV Total energy + Delta-G solvation = -2205.946481 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.58788 -36.51894 -33.62271 -32.21236 -30.99252 -28.57517 -24.92447 -23.59768 -21.23458 -20.80139 -18.22872 -17.05860 -15.96479 -15.17981 -14.63132 -14.46041 -13.73974 -13.18860 -13.13690 -12.83589 -12.65829 -11.79186 -11.36614 -11.09887 -10.99030 -10.85660 -10.69892 -10.56416 -10.18800 -9.87324 -9.58255 -9.07898 -8.81081 -8.50082 -8.27659 -6.11975 -4.19618 3.24973 3.30856 3.32439 3.34339 4.05813 4.35389 5.17344 5.40988 5.46412 5.56358 5.64558 5.98713 6.04483 6.12331 6.21555 6.25505 6.42739 6.54197 6.70912 6.83290 6.99378 7.10590 7.44312 7.59284 7.77327 7.88399 8.03723 8.30054 8.81528 8.91812 9.45898 10.94011 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036745 B = 0.012901 C = 0.009956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.820952 B = 2169.908977 C = 2811.616393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C 0.141 3.859 4 H 0.064 0.936 5 N -0.712 5.712 6 C 0.522 3.478 7 O -0.592 6.592 8 C -0.135 4.135 9 C -0.119 4.119 10 C 0.044 3.956 11 H 0.035 0.965 12 C -0.513 4.513 13 H 0.060 0.940 14 C 0.064 3.936 15 N -0.887 5.887 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.053 0.947 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.384 0.616 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.039 0.961 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -1.014 0.138 5.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.037 3.963 4 H 0.082 0.918 5 N -0.362 5.362 6 C 0.311 3.689 7 O -0.474 6.474 8 C -0.174 4.174 9 C -0.157 4.157 10 C 0.025 3.975 11 H 0.053 0.947 12 C -0.552 4.552 13 H 0.078 0.922 14 C -0.138 4.138 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.219 0.781 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.058 0.942 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.355 -0.697 -0.279 5.407 hybrid contribution -0.006 -0.444 0.858 0.966 sum -5.361 -1.141 0.579 5.511 Atomic orbital electron populations 1.21849 0.97179 1.01082 1.01056 1.21837 0.94133 0.97096 1.03502 1.21342 0.99417 0.91575 0.83985 0.91825 1.45832 1.17071 1.46655 1.26688 1.20486 0.89092 0.77398 0.81949 1.90641 1.75112 1.53440 1.28236 1.21704 0.91944 1.02229 1.01543 1.21820 1.05604 0.97966 0.90295 1.18973 0.86757 0.93646 0.98096 0.94663 1.20961 0.91985 1.44566 0.97674 0.92226 1.24937 0.96580 0.95069 0.97178 1.69842 1.00565 1.47562 1.34543 0.86631 0.77388 0.79329 0.84514 1.20230 1.21291 1.20222 0.92821 0.93576 0.93053 0.92170 0.89442 0.78121 0.90144 0.89146 0.87620 0.94187 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.75 37.16 0.36 -1.71 16 2 C -0.13 -2.13 5.51 -26.73 -0.15 -2.28 16 3 C 0.14 2.67 2.48 -68.38 -0.17 2.50 16 4 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 5 N -0.71 -13.23 5.12 -54.88 -0.28 -13.51 16 6 C 0.52 10.84 7.71 -11.92 -0.09 10.75 16 7 O -0.59 -13.71 17.78 5.56 0.10 -13.61 16 8 C -0.13 -2.70 6.04 -28.10 -0.17 -2.87 16 9 C -0.12 -2.62 5.17 -26.52 -0.14 -2.76 16 10 C 0.04 1.00 1.61 -91.64 -0.15 0.85 16 11 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 12 C -0.51 -12.67 7.83 -34.44 -0.27 -12.94 16 13 H 0.06 1.43 7.34 -52.48 -0.39 1.04 16 14 C 0.06 1.64 5.29 -17.82 -0.09 1.55 16 15 N -0.89 -23.57 11.31 55.43 0.63 -22.94 16 16 Si 0.89 19.91 29.54 -169.99 -5.02 14.88 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.59 6.63 -51.93 -0.34 0.24 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.09 1.54 7.11 -51.93 -0.37 1.17 16 25 H 0.38 6.44 6.97 -40.82 -0.28 6.15 16 26 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 27 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 28 H 0.11 2.59 5.95 -51.93 -0.31 2.28 16 29 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 LS Contribution 243.80 15.07 3.67 3.67 Total: -1.00 -27.43 243.80 -5.97 -33.40 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -4.21 Total: 5.02 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.86 Total: -6.91 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.35 Total: -36.46 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.10 Total: -13.61 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -27.43 -5.97 -33.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.339 kcal (2) G-P(sol) polarization free energy of solvation -27.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds