Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 H 1.09001 * 109.29917 * 55.41414 * 3 2 1 5 5 N 1.45754 * 109.29940 * 296.03603 * 3 2 1 6 6 C 1.33242 * 124.06721 * 220.53171 * 5 3 2 7 7 O 1.21276 * 118.15747 * 182.29400 * 6 5 3 8 8 C 1.50178 * 123.59638 * 2.38387 * 6 5 3 9 9 C 1.53069 * 109.82098 * 342.28284 * 8 6 5 10 10 C 1.52915 * 109.30247 * 174.99592 * 3 2 1 11 11 H 1.08998 * 109.60341 * 51.31078 * 10 3 2 12 12 C 1.50702 * 109.60850 * 290.82278 * 10 3 2 13 13 H 1.08004 * 119.99528 * 0.81154 * 12 10 3 14 14 C 1.37872 * 120.00531 * 180.81130 * 12 10 3 15 15 N 1.31516 * 119.99917 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00082 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47244 * 60.00211 * 16 14 12 18 18 H 1.48503 * 109.47006 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47180 * 300.00015 * 16 14 12 20 20 H 1.08997 * 109.47414 * 300.00449 * 1 2 3 21 21 H 1.09004 * 109.46861 * 60.00374 * 1 2 3 22 22 H 1.08997 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47556 * 240.00057 * 2 1 3 24 24 H 1.09004 * 109.46861 * 119.99626 * 2 1 3 25 25 H 0.96999 * 117.95119 * 40.61492 * 5 3 2 26 26 H 1.09002 * 109.40116 * 222.19493 * 8 6 5 27 27 H 1.09003 * 109.39968 * 102.37119 * 8 6 5 28 28 H 1.09001 * 109.66951 * 168.67826 * 9 8 6 29 29 H 1.09000 * 109.67340 * 289.20565 * 9 8 6 30 30 H 0.96995 * 120.00287 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6095 1.9768 0.8469 5 7 1.6313 2.0980 -1.2360 6 6 2.4083 2.9247 -1.9347 7 8 1.9441 3.4446 -2.9271 8 6 3.8271 3.2459 -1.5615 9 6 4.0778 2.8669 -0.0999 10 6 3.5639 1.4398 0.1259 11 1 3.9917 0.7743 -0.6239 12 6 3.9568 0.9731 1.5039 13 1 3.1952 0.6919 2.2162 14 6 5.2882 0.9050 1.8553 15 7 6.2156 1.2479 0.9881 16 14 5.7749 0.3272 3.5637 17 1 5.2759 -1.0546 3.7798 18 1 7.2546 0.3437 3.6890 19 1 5.1814 1.2325 4.5803 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 0.7377 1.9222 -1.5699 26 1 4.0036 4.3133 -1.6942 27 1 4.5062 2.6841 -2.2029 28 1 5.1461 2.9102 0.1123 29 1 3.5450 3.5566 0.5547 30 1 7.1523 1.1997 1.2351 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709917560.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = -80.869613 kcal Electronic energy + Delta-G solvation = -13007.634230 eV Core-core repulsion = 10800.944971 eV Total energy + Delta-G solvation = -2206.689260 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.24729 -38.19438 -35.34557 -33.86212 -32.63719 -30.21076 -26.63767 -25.24892 -22.96416 -22.22420 -19.93441 -18.84504 -17.69326 -16.83049 -16.45522 -16.13334 -15.22503 -14.85822 -14.55029 -14.46656 -14.22315 -13.30400 -13.04903 -12.78192 -12.72406 -12.51948 -12.20562 -12.18169 -11.65982 -11.64379 -11.28417 -10.92402 -10.54979 -10.35837 -9.92022 -8.06263 -6.18960 1.48763 1.49944 1.56166 1.67590 2.42066 2.56267 3.22736 3.84104 4.06784 4.18106 4.31328 4.42060 4.44383 4.69215 4.76589 4.89408 4.99399 5.17236 5.23211 5.34578 5.35138 5.52900 5.64873 5.90670 5.93626 6.04883 6.25799 6.52447 6.89943 7.29819 7.49436 8.98758 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036745 B = 0.012901 C = 0.009956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.820952 B = 2169.908977 C = 2811.616393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.148 3.852 4 H 0.069 0.931 5 N -0.699 5.699 6 C 0.521 3.479 7 O -0.616 6.616 8 C -0.128 4.128 9 C -0.112 4.112 10 C 0.041 3.959 11 H 0.006 0.994 12 C -0.521 4.521 13 H 0.065 0.935 14 C 0.017 3.983 15 N -0.915 5.915 16 Si 0.951 3.049 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.272 1.272 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.397 0.603 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 -1.323 0.779 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.044 3.956 4 H 0.087 0.913 5 N -0.349 5.349 6 C 0.310 3.690 7 O -0.500 6.500 8 C -0.168 4.168 9 C -0.151 4.151 10 C 0.022 3.978 11 H 0.024 0.976 12 C -0.559 4.559 13 H 0.084 0.916 14 C -0.182 4.182 15 N -0.554 5.554 16 Si 0.777 3.223 17 H -0.196 1.196 18 H -0.217 1.217 19 H -0.197 1.197 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.234 0.766 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.662 -1.022 0.376 6.750 hybrid contribution 0.400 -0.362 0.655 0.849 sum -6.262 -1.384 1.032 6.495 Atomic orbital electron populations 1.21795 0.94201 1.02602 1.01888 1.21763 0.96694 0.94979 1.02699 1.21208 0.96947 0.93309 0.84156 0.91263 1.45686 1.17437 1.45630 1.26164 1.20502 0.89248 0.77488 0.81779 1.90635 1.75528 1.54556 1.29291 1.21632 0.91883 1.03293 0.99986 1.21652 1.03906 0.97805 0.91702 1.18910 0.89298 0.93148 0.96410 0.97621 1.21299 0.92149 1.43897 0.98564 0.91646 1.25643 0.96829 0.95459 1.00260 1.69974 1.00605 1.48747 1.36097 0.85717 0.76670 0.79071 0.80817 1.19645 1.21722 1.19672 0.92028 0.92675 0.91285 0.92823 0.90467 0.76642 0.88482 0.89267 0.90156 0.93983 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.75 71.98 0.70 -2.81 16 2 C -0.12 -3.90 5.51 30.59 0.17 -3.73 16 3 C 0.15 5.39 2.48 45.10 0.11 5.50 16 4 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 5 N -0.70 -24.74 5.12 -446.80 -2.29 -27.03 16 6 C 0.52 20.97 7.71 87.73 0.68 21.64 16 7 O -0.62 -27.67 17.78 -3.02 -0.05 -27.72 16 8 C -0.13 -5.07 6.04 29.71 0.18 -4.89 16 9 C -0.11 -4.96 5.17 30.73 0.16 -4.80 16 10 C 0.04 1.86 1.61 -11.45 -0.02 1.84 16 11 H 0.01 0.29 8.11 -2.39 -0.02 0.27 16 12 C -0.52 -25.47 7.83 25.60 0.20 -25.27 16 13 H 0.07 3.06 7.34 -2.91 -0.02 3.04 16 14 C 0.02 0.88 5.29 84.65 0.45 1.32 16 15 N -0.91 -49.23 11.31 21.45 0.24 -48.98 16 16 Si 0.95 40.50 29.54 68.60 2.03 42.53 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 20 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.05 1.21 6.63 -2.38 -0.02 1.20 16 22 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.08 2.61 7.11 -2.38 -0.02 2.59 16 25 H 0.40 12.32 6.97 -92.71 -0.65 11.67 16 26 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 27 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 28 H 0.08 4.00 5.95 -2.39 -0.01 3.98 16 29 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -57.02 243.80 3.03 -53.99 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.48 Total: 18.41 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 2.63 Total: -11.19 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -2.04 Total: -76.01 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.72 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Total: -57.02 3.03 -53.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709917560.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.883 kcal (2) G-P(sol) polarization free energy of solvation -57.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds