Wall clock time and date at job start Mon Mar 30 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.52995 * 109.47081 * 120.00462 * 2 1 3 5 5 H 1.08995 * 110.29051 * 52.09476 * 4 2 1 6 6 N 1.46825 * 110.23685 * 290.07470 * 4 2 1 7 7 C 1.34424 * 111.31644 * 257.99085 * 6 4 2 8 8 O 1.21280 * 124.93980 * 179.58811 * 7 6 4 9 9 C 1.51276 * 110.11538 * 359.61668 * 7 6 4 10 10 C 1.54480 * 110.24398 * 174.07135 * 4 2 1 11 11 H 1.09009 * 110.96674 * 211.73674 * 10 4 2 12 12 C 1.50694 * 110.97174 * 335.46156 * 10 4 2 13 13 H 1.08000 * 120.00071 * 83.97806 * 12 10 4 14 14 C 1.37881 * 120.00072 * 263.98461 * 12 10 4 15 15 N 1.31516 * 119.99696 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00226 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46876 * 270.00231 * 16 14 12 18 18 H 1.48501 * 109.46900 * 29.99292 * 16 14 12 19 19 H 1.48493 * 109.47431 * 149.99691 * 16 14 12 20 20 H 1.09004 * 109.47562 * 59.99595 * 1 2 3 21 21 H 1.08997 * 109.47535 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47227 * 299.99930 * 1 2 3 23 23 H 1.09002 * 109.46540 * 240.00249 * 2 1 3 24 24 H 1.08998 * 109.47367 * 186.43853 * 3 2 1 25 25 H 1.09004 * 109.47206 * 306.43697 * 3 2 1 26 26 H 1.08995 * 109.47153 * 66.43917 * 3 2 1 27 27 H 0.96998 * 124.33278 * 78.01943 * 6 4 2 28 28 H 1.09000 * 110.49077 * 225.06582 * 9 7 6 29 29 H 1.09004 * 110.48408 * 102.43047 * 9 7 6 30 30 H 0.97002 * 119.99765 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5738 -1.7028 1.3357 6 7 1.7634 0.0809 2.4473 7 6 2.8667 0.7204 2.8726 8 8 2.9157 1.4549 3.8364 9 6 4.0380 0.3909 1.9737 10 6 3.5773 -0.8627 1.1946 11 1 3.9032 -1.7746 1.6951 12 6 4.0722 -0.8254 -0.2283 13 1 4.2442 0.1229 -0.7155 14 6 4.3052 -2.0021 -0.9082 15 7 4.0960 -3.1569 -0.3147 16 14 4.9180 -1.9559 -2.6723 17 1 3.7577 -1.9402 -3.5990 18 1 5.7345 -0.7332 -2.8808 19 1 5.7486 -3.1575 -2.9394 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 3.1239 1.4446 -0.1152 25 1 1.5856 1.9885 -0.8268 26 1 1.7738 1.9219 0.9419 27 1 0.8959 0.1413 2.8771 28 1 4.9238 0.1667 2.5680 29 1 4.2361 1.2148 1.2880 30 1 4.2603 -3.9847 -0.7929 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709918067.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:10 Heat of formation + Delta-G solvation = -53.788010 kcal Electronic energy + Delta-G solvation = -13279.008221 eV Core-core repulsion = 11073.493307 eV Total energy + Delta-G solvation = -2205.514913 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.81851 -36.51730 -32.97989 -32.66609 -30.28428 -26.75164 -26.30147 -24.65493 -20.87309 -19.74071 -18.85807 -16.54206 -16.43290 -14.96646 -14.72532 -14.31538 -13.72278 -13.07821 -12.82256 -12.45273 -12.29529 -11.75799 -11.60876 -11.20713 -11.02317 -10.77068 -10.66068 -10.27886 -10.02139 -9.90480 -9.59136 -9.12604 -8.88411 -8.60147 -8.14767 -6.19395 -4.21223 3.21526 3.30447 3.32920 3.41026 4.24403 4.31220 5.10678 5.49999 5.65442 5.69619 5.79842 6.16266 6.18676 6.25582 6.40157 6.44726 6.49157 6.61649 6.63471 6.79926 7.07331 7.14276 7.29017 7.55752 7.69641 7.77724 7.83127 8.21753 8.83996 9.07210 9.41678 10.90080 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.013770 C = 0.012090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.015247 B = 2032.906814 C = 2315.476369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.133 3.867 5 H 0.070 0.930 6 N -0.726 5.726 7 C 0.518 3.482 8 O -0.574 6.574 9 C -0.155 4.155 10 C 0.043 3.957 11 H 0.070 0.930 12 C -0.504 4.504 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.887 5.887 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.272 1.272 19 H -0.286 1.286 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.041 0.959 23 H 0.101 0.899 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.391 0.609 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 3.027 -1.131 5.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.202 4.202 4 C 0.028 3.972 5 H 0.089 0.911 6 N -0.378 5.378 7 C 0.307 3.693 8 O -0.455 6.455 9 C -0.195 4.195 10 C 0.023 3.977 11 H 0.088 0.912 12 C -0.542 4.542 13 H 0.083 0.917 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.717 3.283 17 H -0.205 1.205 18 H -0.197 1.197 19 H -0.212 1.212 20 H 0.064 0.936 21 H 0.067 0.933 22 H 0.060 0.940 23 H 0.119 0.881 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.227 0.773 28 H 0.097 0.903 29 H 0.112 0.888 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.100 3.173 -0.735 5.237 hybrid contribution -0.244 -0.138 -0.847 0.892 sum -4.344 3.035 -1.582 5.531 Atomic orbital electron populations 1.21914 0.97610 1.00661 1.00317 1.21313 0.92616 0.96501 1.00293 1.21966 1.02617 0.96079 0.99551 1.22236 1.01102 0.91918 0.81917 0.91143 1.46538 1.11198 1.49429 1.30668 1.21340 0.86608 0.77740 0.83648 1.90625 1.85968 1.39150 1.29733 1.22672 0.95900 1.02549 0.98418 1.19818 0.88202 0.93225 0.96425 0.91220 1.20959 1.44252 0.92594 0.96392 0.91692 1.25015 0.94793 0.95591 0.98219 1.69921 1.48108 0.97389 1.37018 0.86621 0.79016 0.77786 0.84854 1.20509 1.19676 1.21209 0.93633 0.93303 0.94000 0.88114 0.90904 0.94464 0.94194 0.77281 0.90253 0.88767 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.12 37.16 0.34 -1.96 16 2 C -0.09 -1.62 2.29 -90.63 -0.21 -1.82 16 3 C -0.14 -2.58 7.78 37.16 0.29 -2.29 16 4 C 0.13 2.62 3.32 -66.98 -0.22 2.40 16 5 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 6 N -0.73 -13.44 4.86 -52.73 -0.26 -13.70 16 7 C 0.52 10.84 7.18 -10.86 -0.08 10.76 16 8 O -0.57 -13.55 18.03 5.56 0.10 -13.45 16 9 C -0.16 -3.20 5.66 -26.75 -0.15 -3.35 16 10 C 0.04 0.95 2.99 -90.14 -0.27 0.68 16 11 H 0.07 1.74 7.47 -51.92 -0.39 1.36 16 12 C -0.50 -11.96 5.62 -34.44 -0.19 -12.15 16 13 H 0.07 1.52 6.12 -52.49 -0.32 1.20 16 14 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -23.35 12.88 55.43 0.71 -22.64 16 16 Si 0.89 19.48 29.54 -169.99 -5.02 14.46 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 20 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 23 H 0.10 2.08 6.69 -51.93 -0.35 1.74 16 24 H 0.07 1.38 3.97 -51.93 -0.21 1.17 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.71 6.47 -51.93 -0.34 0.38 16 27 H 0.39 6.39 8.90 -40.82 -0.36 6.03 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.09 1.88 5.97 -51.93 -0.31 1.57 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 238.53 15.07 3.59 3.59 Total: -1.00 -26.77 238.53 -5.39 -32.16 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -3.93 Total: 5.73 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -0.59 Total: -6.17 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.46 Total: -36.34 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.10 Total: -13.45 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -26.77 -5.39 -32.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709918067.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.628 kcal (2) G-P(sol) polarization free energy of solvation -26.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds