Wall clock time and date at job start Mon Mar 30 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47231 * 2 1 4 4 C 1.52995 * 109.47081 * 120.00462 * 2 1 3 5 5 H 1.08995 * 110.29051 * 52.09476 * 4 2 1 6 6 N 1.46825 * 110.23685 * 290.07470 * 4 2 1 7 7 C 1.34424 * 111.31644 * 257.99085 * 6 4 2 8 8 O 1.21280 * 124.93980 * 179.58811 * 7 6 4 9 9 C 1.51276 * 110.11538 * 359.61668 * 7 6 4 10 10 C 1.54480 * 110.24398 * 174.07135 * 4 2 1 11 11 H 1.09009 * 110.96674 * 211.73674 * 10 4 2 12 12 C 1.50694 * 110.97174 * 335.46156 * 10 4 2 13 13 H 1.08000 * 120.00071 * 83.97806 * 12 10 4 14 14 C 1.37881 * 120.00072 * 263.98461 * 12 10 4 15 15 N 1.31516 * 119.99696 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00226 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46876 * 270.00231 * 16 14 12 18 18 H 1.48501 * 109.46900 * 29.99292 * 16 14 12 19 19 H 1.48493 * 109.47431 * 149.99691 * 16 14 12 20 20 H 1.09004 * 109.47562 * 59.99595 * 1 2 3 21 21 H 1.08997 * 109.47535 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47227 * 299.99930 * 1 2 3 23 23 H 1.09002 * 109.46540 * 240.00249 * 2 1 3 24 24 H 1.08998 * 109.47367 * 186.43853 * 3 2 1 25 25 H 1.09004 * 109.47206 * 306.43697 * 3 2 1 26 26 H 1.08995 * 109.47153 * 66.43917 * 3 2 1 27 27 H 0.96998 * 124.33278 * 78.01943 * 6 4 2 28 28 H 1.09000 * 110.49077 * 225.06582 * 9 7 6 29 29 H 1.09004 * 110.48408 * 102.43047 * 9 7 6 30 30 H 0.97002 * 119.99765 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.5738 -1.7028 1.3357 6 7 1.7634 0.0809 2.4473 7 6 2.8667 0.7204 2.8726 8 8 2.9157 1.4549 3.8364 9 6 4.0380 0.3909 1.9737 10 6 3.5773 -0.8627 1.1946 11 1 3.9032 -1.7746 1.6951 12 6 4.0722 -0.8254 -0.2283 13 1 4.2442 0.1229 -0.7155 14 6 4.3052 -2.0021 -0.9082 15 7 4.0960 -3.1569 -0.3147 16 14 4.9180 -1.9559 -2.6723 17 1 3.7577 -1.9402 -3.5990 18 1 5.7345 -0.7332 -2.8808 19 1 5.7486 -3.1575 -2.9394 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8932 -0.5138 -0.8900 24 1 3.1239 1.4446 -0.1152 25 1 1.5856 1.9885 -0.8268 26 1 1.7738 1.9219 0.9419 27 1 0.8959 0.1413 2.8771 28 1 4.9238 0.1667 2.5680 29 1 4.2361 1.2148 1.2880 30 1 4.2603 -3.9847 -0.7929 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709918067.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:09 Heat of formation + Delta-G solvation = -70.690135 kcal Electronic energy + Delta-G solvation = -13279.741152 eV Core-core repulsion = 11073.493307 eV Total energy + Delta-G solvation = -2206.247844 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.49293 -38.22466 -34.80063 -34.20501 -32.03436 -28.38372 -27.75886 -26.41253 -22.53543 -21.42625 -20.46346 -18.35215 -18.11854 -16.65621 -16.45000 -15.96506 -15.34204 -14.74785 -14.42147 -14.19398 -13.80234 -13.36519 -12.97154 -12.82350 -12.68834 -12.48973 -12.37602 -11.81251 -11.69789 -11.49586 -11.16628 -10.92442 -10.66875 -10.45874 -9.78225 -8.09742 -6.14569 1.48116 1.52586 1.59661 1.71171 2.48199 2.65487 3.22731 3.82794 4.15804 4.21223 4.40636 4.54365 4.58754 4.83949 4.87857 4.97667 5.04562 5.13008 5.19159 5.35109 5.48621 5.61018 5.71162 5.76761 5.89098 6.11845 6.15863 6.37975 6.95183 7.44375 7.50481 9.00285 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.013770 C = 0.012090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.015247 B = 2032.906814 C = 2315.476369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 C -0.140 4.140 4 C 0.141 3.859 5 H 0.063 0.937 6 N -0.708 5.708 7 C 0.520 3.480 8 O -0.599 6.599 9 C -0.150 4.150 10 C 0.037 3.963 11 H 0.036 0.964 12 C -0.498 4.498 13 H 0.070 0.930 14 C 0.022 3.978 15 N -0.923 5.923 16 Si 0.944 3.056 17 H -0.275 1.275 18 H -0.266 1.266 19 H -0.293 1.293 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.406 0.594 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 4.019 -1.858 6.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 C -0.197 4.197 4 C 0.037 3.963 5 H 0.081 0.919 6 N -0.361 5.361 7 C 0.309 3.691 8 O -0.482 6.482 9 C -0.190 4.190 10 C 0.018 3.982 11 H 0.055 0.945 12 C -0.536 4.536 13 H 0.088 0.912 14 C -0.177 4.177 15 N -0.562 5.562 16 Si 0.771 3.229 17 H -0.200 1.200 18 H -0.191 1.191 19 H -0.219 1.219 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.244 0.756 28 H 0.099 0.901 29 H 0.121 0.879 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.962 4.173 -1.471 6.648 hybrid contribution 0.018 -0.440 -0.586 0.733 sum -4.944 3.733 -2.057 6.527 Atomic orbital electron populations 1.21842 0.95035 1.01330 1.01687 1.21218 0.94817 0.96360 0.98106 1.21897 1.01784 0.95711 1.00287 1.22015 0.99143 0.92086 0.83104 0.91885 1.46334 1.11455 1.48235 1.30034 1.21271 0.87063 0.77556 0.83227 1.90619 1.86341 1.40496 1.30782 1.22604 0.96076 1.01929 0.98367 1.19715 0.90198 0.92527 0.95800 0.94518 1.21173 1.43040 0.92566 0.96799 0.91186 1.25633 0.95382 0.95409 1.01325 1.70036 1.49967 0.97849 1.38318 0.85752 0.78493 0.77454 0.81204 1.20018 1.19081 1.21924 0.92061 0.93061 0.92845 0.90362 0.92319 0.92470 0.94335 0.75553 0.90127 0.87852 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.12 71.98 0.66 -3.33 16 2 C -0.09 -2.98 2.29 -10.80 -0.02 -3.01 16 3 C -0.14 -4.62 7.78 71.98 0.56 -4.06 16 4 C 0.14 5.42 3.32 45.43 0.15 5.57 16 5 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 6 N -0.71 -25.02 4.86 -439.33 -2.14 -27.16 16 7 C 0.52 21.08 7.18 87.90 0.63 21.71 16 8 O -0.60 -27.51 18.03 -3.03 -0.05 -27.56 16 9 C -0.15 -6.05 5.66 30.58 0.17 -5.87 16 10 C 0.04 1.64 2.99 -10.48 -0.03 1.61 16 11 H 0.04 1.87 7.47 -2.38 -0.02 1.85 16 12 C -0.50 -23.36 5.62 25.60 0.14 -23.22 16 13 H 0.07 3.18 6.12 -2.91 -0.02 3.17 16 14 C 0.02 1.09 5.46 84.66 0.46 1.55 16 15 N -0.92 -49.12 12.88 21.45 0.28 -48.84 16 16 Si 0.94 39.62 29.54 68.60 2.03 41.65 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 20 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.38 7.88 -2.39 -0.02 1.36 16 23 H 0.08 3.13 6.69 -2.39 -0.02 3.11 16 24 H 0.06 2.10 3.97 -2.39 -0.01 2.09 16 25 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.04 1.27 6.47 -2.39 -0.02 1.26 16 27 H 0.41 12.31 8.90 -92.71 -0.82 11.48 16 28 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 29 H 0.10 4.00 5.97 -2.39 -0.01 3.98 16 30 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 Total: -1.00 -55.38 238.53 3.15 -52.23 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.32 Total: 18.74 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 2.72 Total: -9.05 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.86 Total: -76.00 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.56 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -55.38 3.15 -52.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709918067.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.464 kcal (2) G-P(sol) polarization free energy of solvation -55.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds