Wall clock time and date at job start Mon Mar 30 2020 02:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47243 * 2 1 4 4 H 1.09001 * 110.21826 * 300.79372 * 3 2 1 5 5 C 1.54483 * 110.24717 * 178.76944 * 3 2 1 6 6 H 1.09005 * 110.96701 * 148.29930 * 5 3 2 7 7 C 1.50699 * 110.96578 * 24.53800 * 5 3 2 8 8 H 1.08001 * 120.00508 * 5.11681 * 7 5 3 9 9 C 1.37878 * 120.00035 * 185.11453 * 7 5 3 10 10 N 1.31523 * 119.99621 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00314 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46985 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47162 * 120.00050 * 11 9 7 14 14 H 1.48499 * 109.46799 * 240.00145 * 11 9 7 15 15 C 1.54627 * 101.76799 * 266.41957 * 5 3 2 16 16 C 1.51281 * 104.13112 * 334.98178 * 15 5 3 17 17 O 1.21283 * 124.94158 * 196.50876 * 16 15 5 18 18 N 1.34425 * 110.11762 * 16.65252 * 16 15 5 19 19 C 1.46500 * 124.34947 * 180.24859 * 18 16 15 20 20 H 1.09000 * 109.47322 * 300.00254 * 1 2 3 21 21 H 1.09002 * 109.47016 * 59.99397 * 1 2 3 22 22 H 1.08992 * 109.47565 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46755 * 240.00202 * 2 1 3 24 24 H 1.08997 * 109.47427 * 120.00380 * 2 1 3 25 25 H 0.96997 * 119.99696 * 180.02562 * 10 9 7 26 26 H 1.08999 * 110.48577 * 93.87617 * 15 5 3 27 27 H 1.08994 * 110.48674 * 216.39504 * 15 5 3 28 28 H 1.08998 * 109.47273 * 269.70416 * 19 18 16 29 29 H 1.09000 * 109.46831 * 149.69626 * 19 18 16 30 30 H 1.09002 * 109.46935 * 29.70084 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6719 1.9722 -0.8786 5 6 3.5844 1.4635 0.0311 6 1 3.9735 2.3308 -0.5022 7 6 4.1525 0.1866 -0.5328 8 1 3.4944 -0.5529 -0.9647 9 6 5.5124 -0.0376 -0.4974 10 7 6.3139 0.8632 0.0280 11 14 6.2168 -1.6199 -1.1970 12 1 5.1135 -2.4614 -1.7261 13 1 7.1640 -1.2975 -2.2943 14 1 6.9326 -2.3590 -0.1262 15 6 3.8678 1.5731 1.5472 16 6 2.6212 2.2193 2.1102 17 8 2.5410 2.7385 3.2034 18 7 1.6143 2.1316 1.2239 19 6 0.2670 2.6614 1.4482 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8932 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 7.2707 0.7057 0.0526 26 1 4.0179 0.5839 1.9798 27 1 4.7382 2.2037 1.7280 28 1 -0.3530 1.8936 1.9109 29 1 -0.1708 2.9563 0.4946 30 1 0.3226 3.5287 2.1062 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709921401.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:26 Heat of formation + Delta-G solvation = -41.274687 kcal Electronic energy + Delta-G solvation = -13107.253961 eV Core-core repulsion = 10902.281666 eV Total energy + Delta-G solvation = -2204.972295 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.69336 -36.23495 -33.43485 -31.94242 -31.04207 -26.79077 -26.19607 -24.13990 -21.90361 -20.04646 -18.32787 -16.29046 -15.98344 -15.22141 -14.73712 -14.47538 -13.42564 -13.17520 -12.89990 -12.67066 -12.22364 -12.18326 -11.99075 -11.31932 -11.00795 -10.94561 -10.79016 -10.49606 -10.23925 -9.88849 -9.37883 -9.33236 -8.71953 -8.42671 -7.94079 -6.13553 -4.18346 3.24505 3.33719 3.35357 3.46821 3.81151 4.35173 5.19930 5.33547 5.49991 5.60207 5.69641 5.81091 5.94388 5.98700 6.07324 6.28362 6.37229 6.53263 6.55215 6.72717 6.80999 7.01917 7.36549 7.39855 7.62185 7.84499 7.90870 8.22742 8.82765 9.04283 9.47873 10.96482 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041137 B = 0.012876 C = 0.010460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.486350 B = 2174.109560 C = 2676.322005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.120 4.120 3 C 0.134 3.866 4 H 0.065 0.935 5 C 0.050 3.950 6 H 0.043 0.957 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.065 3.935 10 N -0.885 5.885 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.126 4.126 16 C 0.510 3.490 17 O -0.567 6.567 18 N -0.621 5.621 19 C 0.097 3.903 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.045 0.955 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.262 0.738 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -0.660 -1.735 8.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.158 4.158 3 C 0.031 3.969 4 H 0.084 0.916 5 C 0.031 3.969 6 H 0.061 0.939 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.138 4.138 10 N -0.523 5.523 11 Si 0.721 3.279 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.167 4.167 16 C 0.301 3.699 17 O -0.447 6.447 18 N -0.355 5.355 19 C -0.045 4.045 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.358 -0.320 -1.127 8.439 hybrid contribution 0.407 -0.821 -0.370 0.988 sum -7.951 -1.141 -1.497 8.170 Atomic orbital electron populations 1.22055 0.97886 1.00736 1.01163 1.21880 0.93198 0.97104 1.03617 1.21935 0.98591 0.91598 0.84751 0.91644 1.19673 0.86798 0.98832 0.91610 0.93856 1.21236 0.92048 1.02785 1.39804 0.90877 1.25014 0.97199 0.96629 0.94968 1.69977 1.03960 1.34093 1.44233 0.86521 0.79189 0.83433 0.78795 1.19642 1.21027 1.21027 1.22368 0.93627 1.01231 0.99440 1.21892 0.87066 0.77589 0.83401 1.90580 1.85199 1.47405 1.21530 1.48404 1.10366 1.57453 1.19307 1.21489 0.83609 0.98401 1.01044 0.92823 0.93509 0.93597 0.89665 0.91715 0.92806 0.89095 0.89093 0.93255 0.91872 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.44 37.16 0.35 -1.96 16 2 C -0.12 -2.11 4.61 -26.73 -0.12 -2.23 16 3 C 0.13 2.56 3.13 -67.01 -0.21 2.35 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.05 1.15 2.97 -90.14 -0.27 0.88 16 6 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 7 C -0.52 -12.80 7.81 -34.44 -0.27 -13.06 16 8 H 0.07 1.72 5.19 -52.49 -0.27 1.44 16 9 C 0.06 1.67 5.34 -17.82 -0.10 1.57 16 10 N -0.89 -24.07 12.48 55.43 0.69 -23.38 16 11 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C -0.13 -2.97 5.52 -26.74 -0.15 -3.12 16 16 C 0.51 11.53 8.02 -10.86 -0.09 11.45 16 17 O -0.57 -14.21 17.59 5.55 0.10 -14.11 16 18 N -0.62 -11.94 2.91 -172.70 -0.50 -12.44 16 19 C 0.10 1.48 9.46 59.85 0.57 2.05 16 20 H 0.05 0.76 4.96 -51.93 -0.26 0.50 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.09 1.54 6.03 -51.93 -0.31 1.22 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.26 6.84 8.31 -40.82 -0.34 6.51 16 26 H 0.09 2.22 7.89 -51.93 -0.41 1.81 16 27 H 0.09 2.29 8.01 -51.93 -0.42 1.87 16 28 H 0.05 0.70 6.43 -51.93 -0.33 0.36 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 LS Contribution 243.72 15.07 3.67 3.67 Total: -1.00 -28.23 243.72 -5.43 -33.66 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.09 Total: -0.32 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.28 Total: -2.07 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.19 Total: -35.82 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.10 Total: -14.11 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -28.23 -5.43 -33.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921401.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.614 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds