Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47247 * 2 1 4 4 H 1.08996 * 110.21741 * 303.77132 * 3 2 1 5 5 C 1.54486 * 110.24293 * 65.69185 * 3 2 1 6 6 H 1.09003 * 110.97101 * 26.26450 * 5 3 2 7 7 C 1.50700 * 110.97083 * 262.53576 * 5 3 2 8 8 H 1.07996 * 120.00182 * 359.97438 * 7 5 3 9 9 C 1.37876 * 119.99741 * 180.02562 * 7 5 3 10 10 N 1.31512 * 120.00174 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00026 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47344 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47154 * 300.00054 * 11 9 7 14 14 H 1.48508 * 109.47211 * 59.99753 * 11 9 7 15 15 C 1.54631 * 101.76200 * 144.41655 * 5 3 2 16 16 C 1.51280 * 104.19522 * 335.20547 * 15 5 3 17 17 O 1.21286 * 124.93808 * 196.25399 * 16 15 5 18 18 N 1.34413 * 110.11916 * 16.24932 * 16 15 5 19 19 C 1.46502 * 124.35054 * 180.38479 * 18 16 15 20 20 H 1.08995 * 109.47046 * 293.62529 * 1 2 3 21 21 H 1.09002 * 109.46621 * 53.63461 * 1 2 3 22 22 H 1.09003 * 109.47077 * 173.62738 * 1 2 3 23 23 H 1.09004 * 109.47047 * 239.99820 * 2 1 3 24 24 H 1.09007 * 109.46806 * 120.00183 * 2 1 3 25 25 H 0.97003 * 120.00173 * 359.97438 * 10 9 7 26 26 H 1.09004 * 110.48232 * 93.88116 * 15 5 3 27 27 H 1.09002 * 110.48693 * 216.52028 * 15 5 3 28 28 H 1.08993 * 109.47340 * 264.93669 * 19 18 16 29 29 H 1.09000 * 109.47183 * 24.93787 * 19 18 16 30 30 H 1.09003 * 109.46915 * 144.93966 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6296 1.9871 -0.8502 5 6 1.6557 2.1453 1.3209 6 1 1.5376 1.4219 2.1277 7 6 0.4044 2.9675 1.1501 8 1 -0.0922 3.0024 0.1917 9 6 -0.1058 3.6762 2.2171 10 7 0.4992 3.6341 3.3841 11 14 -1.6572 4.6949 2.0057 12 1 -1.9956 5.3544 3.2924 13 1 -1.4325 5.7283 0.9632 14 1 -2.7773 3.8112 1.5933 15 6 2.8845 3.0516 1.5649 16 6 4.0078 2.3613 0.8230 17 8 5.1885 2.5862 0.9851 18 7 3.5069 1.4625 -0.0418 19 6 4.3207 0.6125 -0.9145 20 1 -0.3633 0.4118 0.9415 21 1 -0.3632 0.6094 -0.8276 22 1 -0.3633 -1.0213 -0.1141 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.3042 3.1042 3.4942 26 1 2.7118 4.0469 1.1551 27 1 3.1099 3.1103 2.6297 28 1 4.4161 1.0825 -1.8932 29 1 5.3100 0.4829 -0.4757 30 1 3.8413 -0.3603 -1.0238 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709921405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = -53.337408 kcal Electronic energy + Delta-G solvation = -13073.708982 eV Core-core repulsion = 10868.213609 eV Total energy + Delta-G solvation = -2205.495374 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.78293 -36.38969 -33.72059 -32.39646 -30.78296 -26.42085 -26.04254 -24.46401 -21.74857 -20.02610 -18.70148 -17.20044 -15.74307 -15.46354 -14.67233 -14.07313 -13.75949 -13.46781 -13.11659 -12.80327 -12.24099 -11.79093 -11.66788 -11.60278 -11.17273 -11.04206 -10.83392 -10.48020 -10.28327 -10.14096 -9.60052 -9.27462 -8.59715 -8.42791 -8.11143 -6.45101 -4.19562 3.29339 3.39476 3.40329 3.59054 3.66539 4.45037 5.21544 5.22450 5.35493 5.42480 5.70077 5.71618 5.85282 5.89867 6.05351 6.18297 6.24348 6.35058 6.40769 6.54216 6.71269 6.94410 6.98211 7.19630 7.35286 7.72910 8.03973 8.30098 8.74085 8.87183 9.52337 10.93024 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037630 B = 0.013144 C = 0.010537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.904652 B = 2129.671033 C = 2656.721088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.137 3.863 4 H 0.073 0.927 5 C 0.039 3.961 6 H 0.039 0.961 7 C -0.591 4.591 8 H 0.056 0.944 9 C 0.024 3.976 10 N -0.905 5.905 11 Si 1.067 2.933 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.287 1.287 15 C -0.149 4.149 16 C 0.514 3.486 17 O -0.563 6.563 18 N -0.624 5.624 19 C 0.094 3.906 20 H 0.076 0.924 21 H 0.052 0.948 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.272 0.728 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -5.738 -6.724 8.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.035 3.965 4 H 0.091 0.909 5 C 0.020 3.980 6 H 0.057 0.943 7 C -0.629 4.629 8 H 0.074 0.926 9 C -0.182 4.182 10 N -0.540 5.540 11 Si 0.895 3.105 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.213 1.213 15 C -0.190 4.190 16 C 0.304 3.696 17 O -0.443 6.443 18 N -0.358 5.358 19 C -0.049 4.049 20 H 0.095 0.905 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.379 -4.672 -5.884 7.523 hybrid contribution 1.137 -1.074 -0.962 1.836 sum 0.758 -5.746 -6.847 8.970 Atomic orbital electron populations 1.21649 0.94369 0.99883 1.03984 1.21710 0.97258 0.96164 1.00728 1.22029 0.76965 0.96055 1.01482 0.90888 1.19856 0.93401 0.93600 0.91154 0.94280 1.21763 1.09940 1.31862 0.99338 0.92584 1.25789 1.02726 0.97124 0.92538 1.70807 1.19793 1.38938 1.24445 0.83562 0.74931 0.76130 0.75907 1.20808 1.21402 1.21341 1.22739 0.94663 1.01335 1.00262 1.21609 0.89678 0.79106 0.79218 1.90597 1.18343 1.67058 1.68291 1.48423 1.08296 1.39169 1.39867 1.21429 0.95639 0.94154 0.93635 0.90472 0.92859 0.94075 0.93164 0.92323 0.91697 0.88516 0.89842 0.93436 0.91292 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.27 37.16 0.34 -1.94 16 2 C -0.12 -1.98 5.04 -26.73 -0.13 -2.11 16 3 C 0.14 2.66 2.95 -67.01 -0.20 2.46 16 4 H 0.07 1.45 7.74 -51.93 -0.40 1.05 16 5 C 0.04 0.89 1.56 -90.13 -0.14 0.75 16 6 H 0.04 0.95 7.62 -51.93 -0.40 0.56 16 7 C -0.59 -14.73 7.25 -34.44 -0.25 -14.98 16 8 H 0.06 1.38 7.60 -52.49 -0.40 0.98 16 9 C 0.02 0.62 5.37 -17.82 -0.10 0.53 16 10 N -0.90 -25.48 13.50 55.43 0.75 -24.73 16 11 Si 1.07 23.49 29.90 -169.99 -5.08 18.41 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.12 7.11 56.52 0.40 -5.71 16 14 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 15 C -0.15 -3.46 5.63 -26.74 -0.15 -3.61 16 16 C 0.51 11.55 8.02 -10.86 -0.09 11.46 16 17 O -0.56 -13.94 17.53 5.55 0.10 -13.84 16 18 N -0.62 -12.07 3.18 -172.71 -0.55 -12.62 16 19 C 0.09 1.44 10.74 59.85 0.64 2.08 16 20 H 0.08 1.45 7.06 -51.93 -0.37 1.08 16 21 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.71 6.86 -51.93 -0.36 0.36 16 24 H 0.06 0.99 8.08 -51.92 -0.42 0.57 16 25 H 0.27 7.59 5.84 -40.82 -0.24 7.36 16 26 H 0.10 2.33 7.89 -51.93 -0.41 1.92 16 27 H 0.08 1.99 7.18 -51.93 -0.37 1.62 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.07 7.82 -51.93 -0.41 0.66 16 30 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 LS Contribution 245.85 15.07 3.70 3.70 Total: -1.00 -28.98 245.85 -5.32 -34.30 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -4.17 Total: 0.15 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -0.07 Total: -5.37 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.20 Total: -37.35 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.10 Total: -13.84 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.41 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.98 -5.32 -34.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.038 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds