Wall clock time and date at job start Mon Mar 30 2020 02:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47247 * 2 1 4 4 H 1.08996 * 110.21741 * 303.77132 * 3 2 1 5 5 C 1.54486 * 110.24293 * 65.69185 * 3 2 1 6 6 H 1.09003 * 110.97101 * 26.26450 * 5 3 2 7 7 C 1.50700 * 110.97083 * 262.53576 * 5 3 2 8 8 H 1.07996 * 120.00182 * 359.97438 * 7 5 3 9 9 C 1.37876 * 119.99741 * 180.02562 * 7 5 3 10 10 N 1.31512 * 120.00174 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00026 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47344 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47154 * 300.00054 * 11 9 7 14 14 H 1.48508 * 109.47211 * 59.99753 * 11 9 7 15 15 C 1.54631 * 101.76200 * 144.41655 * 5 3 2 16 16 C 1.51280 * 104.19522 * 335.20547 * 15 5 3 17 17 O 1.21286 * 124.93808 * 196.25399 * 16 15 5 18 18 N 1.34413 * 110.11916 * 16.24932 * 16 15 5 19 19 C 1.46502 * 124.35054 * 180.38479 * 18 16 15 20 20 H 1.08995 * 109.47046 * 293.62529 * 1 2 3 21 21 H 1.09002 * 109.46621 * 53.63461 * 1 2 3 22 22 H 1.09003 * 109.47077 * 173.62738 * 1 2 3 23 23 H 1.09004 * 109.47047 * 239.99820 * 2 1 3 24 24 H 1.09007 * 109.46806 * 120.00183 * 2 1 3 25 25 H 0.97003 * 120.00173 * 359.97438 * 10 9 7 26 26 H 1.09004 * 110.48232 * 93.88116 * 15 5 3 27 27 H 1.09002 * 110.48693 * 216.52028 * 15 5 3 28 28 H 1.08993 * 109.47340 * 264.93669 * 19 18 16 29 29 H 1.09000 * 109.47183 * 24.93787 * 19 18 16 30 30 H 1.09003 * 109.46915 * 144.93966 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6296 1.9871 -0.8502 5 6 1.6557 2.1453 1.3209 6 1 1.5376 1.4219 2.1277 7 6 0.4044 2.9675 1.1501 8 1 -0.0922 3.0024 0.1917 9 6 -0.1058 3.6762 2.2171 10 7 0.4992 3.6341 3.3841 11 14 -1.6572 4.6949 2.0057 12 1 -1.9956 5.3544 3.2924 13 1 -1.4325 5.7283 0.9632 14 1 -2.7773 3.8112 1.5933 15 6 2.8845 3.0516 1.5649 16 6 4.0078 2.3613 0.8230 17 8 5.1885 2.5862 0.9851 18 7 3.5069 1.4625 -0.0418 19 6 4.3207 0.6125 -0.9145 20 1 -0.3633 0.4118 0.9415 21 1 -0.3632 0.6094 -0.8276 22 1 -0.3633 -1.0213 -0.1141 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.3042 3.1042 3.4942 26 1 2.7118 4.0469 1.1551 27 1 3.1099 3.1103 2.6297 28 1 4.4161 1.0825 -1.8932 29 1 5.3100 0.4829 -0.4757 30 1 3.8413 -0.3603 -1.0238 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709921405.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:28 Heat of formation + Delta-G solvation = -71.249047 kcal Electronic energy + Delta-G solvation = -13074.485689 eV Core-core repulsion = 10868.213609 eV Total energy + Delta-G solvation = -2206.272081 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.49741 -38.15513 -35.55918 -33.86196 -32.55178 -28.16033 -27.55000 -26.19433 -23.44189 -21.66108 -20.35889 -19.10369 -17.45860 -17.13694 -16.32532 -15.62916 -15.42683 -15.21071 -14.79775 -14.33022 -13.71716 -13.52140 -13.37501 -13.08384 -12.67003 -12.56742 -12.48675 -12.10410 -11.92772 -11.84495 -11.31031 -11.03919 -10.54189 -10.38595 -9.68577 -8.53385 -6.27476 1.49420 1.61270 1.67170 1.85197 2.11605 2.62933 3.24531 3.57979 3.85140 3.98161 4.31241 4.35035 4.44312 4.52063 4.59439 4.67715 4.70268 4.82286 4.99475 5.06660 5.16581 5.28286 5.47900 5.60964 5.67295 5.96837 6.14555 6.26383 6.66261 7.13773 7.52078 8.85398 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037630 B = 0.013144 C = 0.010537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.904652 B = 2129.671033 C = 2656.721088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.142 3.858 4 H 0.076 0.924 5 C 0.036 3.964 6 H 0.019 0.981 7 C -0.585 4.585 8 H 0.062 0.938 9 C -0.026 4.026 10 N -0.938 5.938 11 Si 1.109 2.891 12 H -0.294 1.294 13 H -0.273 1.273 14 H -0.267 1.267 15 C -0.146 4.146 16 C 0.510 3.490 17 O -0.591 6.591 18 N -0.614 5.614 19 C 0.087 3.913 20 H 0.042 0.958 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.260 0.740 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -6.963 -8.838 11.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C 0.040 3.960 4 H 0.094 0.906 5 C 0.016 3.984 6 H 0.037 0.963 7 C -0.623 4.623 8 H 0.080 0.920 9 C -0.225 4.225 10 N -0.575 5.575 11 Si 0.932 3.068 12 H -0.220 1.220 13 H -0.199 1.199 14 H -0.192 1.192 15 C -0.187 4.187 16 C 0.300 3.700 17 O -0.473 6.473 18 N -0.346 5.346 19 C -0.054 4.054 20 H 0.062 0.938 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.104 0.896 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.071 -5.937 -8.046 10.056 hybrid contribution 1.365 -0.735 -0.342 1.588 sum 0.294 -6.672 -8.388 10.722 Atomic orbital electron populations 1.21594 0.94124 1.01565 1.02208 1.21687 0.97352 0.93937 1.02222 1.21962 0.76973 0.97945 0.99125 0.90625 1.19771 0.92626 0.93235 0.92723 0.96312 1.22040 1.10182 1.30920 0.99173 0.91997 1.27050 1.04981 0.98180 0.92277 1.70915 1.20287 1.40491 1.25809 0.83015 0.72625 0.75495 0.75692 1.21972 1.19891 1.19172 1.22582 0.95714 1.01009 0.99390 1.21356 0.88859 0.79843 0.79954 1.90575 1.19072 1.68217 1.69454 1.48468 1.08585 1.38341 1.39189 1.21767 0.95140 0.95052 0.93419 0.93836 0.92547 0.91140 0.89554 0.92802 0.92971 0.89954 0.91686 0.91410 0.91639 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.27 71.98 0.67 -3.39 16 2 C -0.11 -3.37 5.04 30.59 0.15 -3.22 16 3 C 0.14 5.23 2.95 45.44 0.13 5.37 16 4 H 0.08 2.79 7.74 -2.39 -0.02 2.78 16 5 C 0.04 1.63 1.56 -10.48 -0.02 1.61 16 6 H 0.02 0.94 7.62 -2.39 -0.02 0.92 16 7 C -0.59 -29.08 7.25 25.60 0.19 -28.90 16 8 H 0.06 2.96 7.60 -2.91 -0.02 2.94 16 9 C -0.03 -1.36 5.37 84.65 0.45 -0.90 16 10 N -0.94 -54.24 13.50 21.45 0.29 -53.95 16 11 Si 1.11 46.93 29.90 68.60 2.05 48.98 16 12 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 15 C -0.15 -6.96 5.63 30.59 0.17 -6.79 16 16 C 0.51 22.88 8.02 87.90 0.71 23.58 16 17 O -0.59 -29.32 17.53 -3.05 -0.05 -29.37 16 18 N -0.61 -22.51 3.18 -818.92 -2.61 -25.12 16 19 C 0.09 2.34 10.74 127.77 1.37 3.71 16 20 H 0.04 1.57 7.06 -2.39 -0.02 1.56 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 1.99 6.86 -2.39 -0.02 1.97 16 24 H 0.05 1.67 8.08 -2.38 -0.02 1.65 16 25 H 0.26 15.17 5.84 -92.71 -0.54 14.63 16 26 H 0.08 4.10 7.89 -2.38 -0.02 4.08 16 27 H 0.06 3.28 7.18 -2.39 -0.02 3.26 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.85 7.82 -2.39 -0.02 1.83 16 30 H 0.10 2.03 6.47 -2.39 -0.02 2.02 16 Total: -1.00 -62.75 245.85 4.85 -57.90 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.34 Total: 10.49 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.83 Total: -8.92 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.32 Total: -79.08 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.05 Total: -29.37 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.05 Total: 48.98 kcal Total: -62.75 4.85 -57.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921405.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.350 kcal (2) G-P(sol) polarization free energy of solvation -62.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds