Wall clock time and date at job start Mon Mar 30 2020 02:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47296 * 2 1 4 4 H 1.08994 * 110.21599 * 55.59714 * 3 2 1 5 5 C 1.54480 * 110.25098 * 177.62678 * 3 2 1 6 6 H 1.08993 * 110.96858 * 211.70410 * 5 3 2 7 7 C 1.50703 * 110.96602 * 335.46338 * 5 3 2 8 8 H 1.08005 * 119.99977 * 85.65760 * 7 5 3 9 9 C 1.37878 * 120.00066 * 265.66097 * 7 5 3 10 10 N 1.31511 * 119.99834 * 185.51189 * 9 7 5 11 11 Si 1.86800 * 119.99906 * 5.50621 * 9 7 5 12 12 H 1.48504 * 109.46784 * 94.38750 * 11 9 7 13 13 H 1.48500 * 109.47042 * 214.38327 * 11 9 7 14 14 H 1.48498 * 109.47249 * 334.38998 * 11 9 7 15 15 C 1.54624 * 101.76741 * 93.58015 * 5 3 2 16 16 C 1.51284 * 104.19554 * 24.80023 * 15 5 3 17 17 O 1.21282 * 124.94537 * 164.01245 * 16 15 5 18 18 N 1.34416 * 110.11335 * 343.74858 * 16 15 5 19 19 C 1.46510 * 124.34838 * 179.61423 * 18 16 15 20 20 H 1.08999 * 109.46962 * 70.65980 * 1 2 3 21 21 H 1.09001 * 109.46740 * 190.65904 * 1 2 3 22 22 H 1.09000 * 109.46984 * 310.65476 * 1 2 3 23 23 H 1.08996 * 109.47324 * 240.00071 * 2 1 3 24 24 H 1.08997 * 109.47446 * 120.00104 * 2 1 3 25 25 H 0.96999 * 120.00065 * 180.02562 * 10 9 7 26 26 H 1.09001 * 110.48878 * 266.12556 * 15 5 3 27 27 H 1.09001 * 110.48660 * 143.47840 * 15 5 3 28 28 H 1.08996 * 109.46944 * 355.03397 * 19 18 16 29 29 H 1.08994 * 109.47301 * 115.03296 * 19 18 16 30 30 H 1.08999 * 109.46681 * 235.03124 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6208 1.9902 0.8439 5 6 3.5835 1.4639 0.0600 6 1 3.9408 2.3424 0.5972 7 6 4.1165 0.1995 0.6832 8 1 4.2796 -0.6764 0.0726 9 6 4.3959 0.1608 2.0328 10 7 4.9617 -0.9045 2.5569 11 14 3.9708 1.6214 3.1169 12 1 2.6372 1.4079 3.7344 13 1 4.9940 1.7601 4.1842 14 1 3.9431 2.8572 2.2940 15 6 3.9563 1.5419 -1.4386 16 6 2.7442 2.1702 -2.0902 17 8 2.7264 2.6567 -3.2010 18 7 1.6881 2.1056 -1.2611 19 6 0.3566 2.6294 -1.5762 20 1 -0.3633 0.3403 -0.9697 21 1 -0.3633 -1.0100 0.1901 22 1 -0.3633 0.6695 0.7796 23 1 1.8933 -0.5138 -0.8899 24 1 1.8934 -0.5138 0.8899 25 1 5.1580 -0.9319 3.5064 26 1 4.1312 0.5440 -1.8407 27 1 4.8350 2.1710 -1.5809 28 1 0.3874 3.1475 -2.5346 29 1 -0.3544 1.8051 -1.6315 30 1 0.0462 3.3251 -0.7967 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709921411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:30 Heat of formation + Delta-G solvation = -41.623259 kcal Electronic energy + Delta-G solvation = -13175.141786 eV Core-core repulsion = 10970.154376 eV Total energy + Delta-G solvation = -2204.987410 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87552 -36.39052 -33.37212 -31.89506 -31.59879 -27.14461 -26.41526 -24.03958 -21.83421 -19.81247 -18.73422 -16.85507 -16.20344 -15.27175 -14.95595 -14.18402 -13.65098 -13.35095 -12.90679 -12.80070 -12.66524 -12.18506 -12.11325 -11.51702 -11.14938 -11.03867 -10.78490 -10.43171 -10.15688 -10.06590 -9.65941 -9.24115 -9.00854 -8.66558 -8.05613 -6.23207 -4.22581 3.17587 3.23619 3.26260 3.28530 3.68882 4.27481 5.00459 5.19337 5.49014 5.56304 5.61176 5.75319 5.86859 5.93546 5.99530 6.09498 6.24327 6.32555 6.46432 6.56482 6.71584 6.89811 7.05246 7.19758 7.29696 7.52041 7.79027 8.35096 8.81105 8.83447 9.37211 10.88468 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037319 B = 0.014144 C = 0.012663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.106914 B = 1979.184015 C = 2210.627172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.123 3.877 4 H 0.063 0.937 5 C 0.003 3.997 6 H 0.059 0.941 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.076 3.924 10 N -0.890 5.890 11 Si 0.866 3.134 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.259 1.259 15 C -0.141 4.141 16 C 0.514 3.486 17 O -0.565 6.565 18 N -0.617 5.617 19 C 0.086 3.914 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.046 0.954 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.266 0.734 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.335 4.071 -2.005 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.151 4.151 3 C 0.020 3.980 4 H 0.081 0.919 5 C -0.016 4.016 6 H 0.077 0.923 7 C -0.538 4.538 8 H 0.099 0.901 9 C -0.127 4.127 10 N -0.527 5.527 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.184 1.184 15 C -0.181 4.181 16 C 0.304 3.696 17 O -0.445 6.445 18 N -0.350 5.350 19 C -0.056 4.056 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.354 4.259 -2.398 8.830 hybrid contribution -0.388 0.686 0.813 1.132 sum -7.742 4.945 -1.585 9.322 Atomic orbital electron populations 1.22062 0.98079 1.00799 1.00635 1.21734 0.92799 0.96315 1.04229 1.22446 0.99674 0.92438 0.83414 0.91919 1.20392 0.89357 0.99709 0.92182 0.92321 1.20772 1.42545 0.96660 0.93858 0.90148 1.25031 0.94014 0.95681 0.97981 1.69893 1.40935 1.28818 1.13053 0.87025 0.78794 0.84098 0.80754 1.20018 1.21163 1.18411 1.22408 0.95339 1.01890 0.98438 1.21398 0.86449 0.77541 0.84209 1.90606 1.85572 1.48442 1.19870 1.48428 1.09651 1.57951 1.18960 1.21652 0.84066 0.98670 1.01219 0.93270 0.93376 0.93502 0.92302 0.88535 0.92388 0.88326 0.89636 0.90920 0.92060 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.18 37.16 0.34 -2.08 16 2 C -0.11 -2.09 4.79 -26.73 -0.13 -2.22 16 3 C 0.12 2.38 2.87 -67.01 -0.19 2.19 16 4 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 5 C 0.00 0.07 2.42 -90.14 -0.22 -0.15 16 6 H 0.06 1.29 5.39 -51.93 -0.28 1.01 16 7 C -0.50 -12.39 6.65 -34.44 -0.23 -12.62 16 8 H 0.08 2.17 7.89 -52.48 -0.41 1.76 16 9 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.89 -24.96 13.96 55.43 0.77 -24.18 16 11 Si 0.87 19.49 27.60 -169.99 -4.69 14.80 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.26 -5.58 5.82 56.52 0.33 -5.25 16 15 C -0.14 -2.83 6.41 -26.74 -0.17 -3.01 16 16 C 0.51 10.61 8.02 -10.86 -0.09 10.52 16 17 O -0.56 -12.96 17.36 5.56 0.10 -12.86 16 18 N -0.62 -11.41 2.95 -172.70 -0.51 -11.92 16 19 C 0.09 1.29 10.50 59.85 0.63 1.92 16 20 H 0.05 0.70 5.41 -51.93 -0.28 0.42 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.10 2.02 6.89 -51.93 -0.36 1.66 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.10 1.98 7.78 -51.93 -0.40 1.58 16 27 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 28 H 0.07 1.10 7.55 -51.93 -0.39 0.71 16 29 H 0.06 0.82 5.34 -51.93 -0.28 0.55 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 241.53 15.07 3.64 3.64 Total: -1.00 -28.30 241.53 -4.99 -33.29 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.15 Total: 0.82 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.15 Total: -3.57 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.26 Total: -36.11 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.10 Total: -12.86 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.69 Total: 14.80 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.30 -4.99 -33.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709921411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.338 kcal (2) G-P(sol) polarization free energy of solvation -28.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds