Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99737 * 2 1 4 4 H 1.08001 * 120.00165 * 154.59710 * 3 2 1 5 5 C 1.38805 * 120.00035 * 334.59141 * 3 2 1 6 6 N 1.31619 * 120.00152 * 157.44725 * 5 3 2 7 7 Si 1.86803 * 120.00241 * 337.17121 * 5 3 2 8 8 H 1.48496 * 109.47268 * 84.68752 * 7 5 3 9 9 H 1.48498 * 109.47260 * 204.68927 * 7 5 3 10 10 H 1.48498 * 109.47018 * 324.69132 * 7 5 3 11 11 C 1.46491 * 120.00075 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47488 * 269.99845 * 11 2 1 13 13 C 1.54831 * 119.62572 * 187.76582 * 12 11 2 14 14 C 1.55235 * 81.33674 * 161.70080 * 13 12 11 15 15 C 1.55595 * 118.87243 * 286.00424 * 12 11 2 16 16 C 1.56800 * 101.25098 * 62.19483 * 14 13 12 17 17 O 1.45497 * 99.22337 * 316.80941 * 16 14 13 18 18 H 1.08993 * 109.47116 * 88.10719 * 1 2 3 19 19 H 1.08999 * 109.46736 * 208.11097 * 1 2 3 20 20 H 1.09004 * 109.47013 * 328.10827 * 1 2 3 21 21 H 0.97001 * 120.00062 * 180.02562 * 6 5 3 22 22 H 1.09006 * 109.47245 * 30.00404 * 11 2 1 23 23 H 1.09003 * 109.47235 * 149.99951 * 11 2 1 24 24 H 1.09000 * 114.55593 * 274.22743 * 13 12 11 25 25 H 1.08993 * 114.55540 * 48.00383 * 13 12 11 26 26 H 1.08995 * 121.31478 * 196.18115 * 14 13 12 27 27 H 1.08999 * 114.62981 * 311.30150 * 15 12 11 28 28 H 1.09000 * 114.63465 * 85.33382 * 15 12 11 29 29 H 1.09000 * 111.44791 * 199.30860 * 16 14 13 30 30 H 1.08995 * 111.49292 * 74.33079 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1514 1.2313 0.4012 5 6 1.5563 2.3299 -0.5158 6 7 1.9800 3.5179 -0.1396 7 14 0.1614 2.1835 -1.7497 8 1 -1.1232 2.0075 -1.0260 9 1 0.0996 3.4161 -2.5755 10 1 0.3991 1.0103 -2.6285 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4432 13 6 3.3663 -2.9285 1.7207 14 6 3.4015 -2.2835 3.1324 15 6 3.5350 -0.9647 2.2764 16 6 1.8904 -2.3635 3.5430 17 8 1.2851 -1.9453 2.2878 18 1 -0.3633 0.0339 -1.0270 19 1 -0.3633 -0.9064 0.4842 20 1 -0.3633 0.8726 0.5430 21 1 1.5651 4.3173 -0.4998 22 1 1.6084 -2.0286 -0.5130 23 1 3.1499 -1.1385 -0.5133 24 1 2.8587 -3.8924 1.6859 25 1 4.3143 -2.9156 1.1830 26 1 4.1588 -2.5638 3.8645 27 1 4.4924 -0.8409 1.7703 28 1 3.1834 -0.0602 2.7729 29 1 1.6589 -1.6667 4.3487 30 1 1.6012 -3.3811 3.8054 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716116526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 44.543999 kcal Electronic energy + Delta-G solvation = -13152.716823 eV Core-core repulsion = 10951.465905 eV Total energy + Delta-G solvation = -2201.250917 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.86499 -35.57930 -33.03289 -31.55414 -28.89626 -26.15049 -25.45473 -24.83424 -21.70799 -20.10080 -19.45756 -16.68680 -15.90743 -15.22704 -14.86348 -14.63510 -13.98547 -13.33710 -12.66263 -12.44176 -12.08778 -11.88529 -11.80486 -11.54801 -11.37622 -10.93852 -10.58876 -10.34121 -10.02270 -9.97961 -9.83781 -9.43421 -8.91213 -8.48757 -6.91226 -5.89696 -3.23372 3.43519 3.55354 3.59693 4.11428 4.50349 4.62351 4.68990 4.80764 5.08834 5.30464 5.48939 5.53446 5.74843 5.84343 5.96749 5.98733 6.06770 6.17569 6.34209 6.41630 6.48143 6.53769 6.59429 6.70552 6.91874 7.14575 8.02285 8.38329 9.01601 9.80545 10.14916 11.26482 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.011485 C = 0.010785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.198870 B = 2437.305994 C = 2595.471496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.603 5.603 3 C -0.262 4.262 4 H 0.085 0.915 5 C 0.025 3.975 6 N -0.908 5.908 7 Si 0.890 3.110 8 H -0.287 1.287 9 H -0.307 1.307 10 H -0.280 1.280 11 C 0.186 3.814 12 C 0.067 3.933 13 C -0.171 4.171 14 C -0.169 4.169 15 C -0.138 4.138 16 C 0.050 3.950 17 O -0.352 6.352 18 H 0.004 0.996 19 H 0.041 0.959 20 H 0.052 0.948 21 H 0.262 0.738 22 H 0.048 0.952 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -11.859 4.240 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.325 5.325 3 C -0.390 4.390 4 H 0.103 0.897 5 C -0.174 4.174 6 N -0.551 5.551 7 Si 0.722 3.278 8 H -0.214 1.214 9 H -0.236 1.236 10 H -0.206 1.206 11 C 0.059 3.941 12 C 0.025 3.975 13 C -0.209 4.209 14 C -0.187 4.187 15 C -0.175 4.175 16 C -0.026 4.026 17 O -0.271 6.271 18 H 0.021 0.979 19 H 0.060 0.940 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.486 -11.633 4.136 12.435 hybrid contribution -0.575 -0.037 -0.422 0.714 sum 0.911 -11.670 3.714 12.280 Atomic orbital electron populations 1.21321 0.84404 1.00507 0.97198 1.44000 1.00795 1.01858 1.85818 1.18876 1.01095 0.84414 1.34576 0.89708 1.25186 0.98133 0.95010 0.99049 1.69875 1.44166 0.97162 1.43881 0.86915 0.82609 0.75472 0.82843 1.21413 1.23551 1.20579 1.20332 0.97180 0.87997 0.88629 1.25122 0.83934 0.93762 0.94727 1.24437 1.01241 0.98498 0.96757 1.25278 0.97219 0.99980 0.96224 1.24523 0.99546 0.95934 0.97522 1.23780 0.90786 0.99194 0.88886 1.89721 1.27121 1.87563 1.22660 0.97856 0.94026 0.92930 0.92865 0.93411 0.90690 0.91665 0.88937 0.87599 0.88484 0.90394 0.91075 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.62 8.36 59.85 0.50 3.12 16 2 N -0.60 -14.88 2.70 -181.12 -0.49 -15.37 16 3 C -0.26 -7.38 10.02 -15.06 -0.15 -7.53 16 4 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 5 C 0.03 0.74 5.20 -17.43 -0.09 0.65 16 6 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 7 Si 0.89 23.29 24.04 -169.99 -4.09 19.21 16 8 H -0.29 -7.30 6.51 56.52 0.37 -6.93 16 9 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 10 H -0.28 -7.24 6.94 56.52 0.39 -6.85 16 11 C 0.19 3.77 5.95 -4.05 -0.02 3.75 16 12 C 0.07 1.22 2.15 -96.74 -0.21 1.02 16 13 C -0.17 -2.46 7.40 -28.61 -0.21 -2.67 16 14 C -0.17 -2.40 6.52 -93.22 -0.61 -3.00 16 15 C -0.14 -2.40 7.82 -26.75 -0.21 -2.61 16 16 C 0.05 0.76 7.91 39.21 0.31 1.07 16 17 O -0.35 -6.86 11.59 -35.23 -0.41 -7.27 16 18 H 0.00 0.09 5.16 -51.93 -0.27 -0.18 16 19 H 0.04 0.89 7.78 -51.93 -0.40 0.49 16 20 H 0.05 1.32 6.60 -51.93 -0.34 0.98 16 21 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 22 H 0.05 0.90 8.07 -51.93 -0.42 0.48 16 23 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 24 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 25 H 0.09 1.18 7.88 -51.93 -0.41 0.77 16 26 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.10 1.57 7.89 -51.93 -0.41 1.16 16 28 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 242.65 15.07 3.66 3.66 Total: -1.00 -31.52 242.65 -5.63 -37.15 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: -4.38 Total: -3.73 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.69 Total: -6.20 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.29 Total: -42.81 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.41 Total: -7.27 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.09 Total: 19.21 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.52 -5.63 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716116526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.689 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds