Wall clock time and date at job start Mon Mar 30 2020 02:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36942 * 119.99737 * 2 1 4 4 H 1.08001 * 120.00165 * 154.59710 * 3 2 1 5 5 C 1.38805 * 120.00035 * 334.59141 * 3 2 1 6 6 N 1.31619 * 120.00152 * 157.44725 * 5 3 2 7 7 Si 1.86803 * 120.00241 * 337.17121 * 5 3 2 8 8 H 1.48496 * 109.47268 * 84.68752 * 7 5 3 9 9 H 1.48498 * 109.47260 * 204.68927 * 7 5 3 10 10 H 1.48498 * 109.47018 * 324.69132 * 7 5 3 11 11 C 1.46491 * 120.00075 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47488 * 269.99845 * 11 2 1 13 13 C 1.54831 * 119.62572 * 187.76582 * 12 11 2 14 14 C 1.55235 * 81.33674 * 161.70080 * 13 12 11 15 15 C 1.55595 * 118.87243 * 286.00424 * 12 11 2 16 16 C 1.56800 * 101.25098 * 62.19483 * 14 13 12 17 17 O 1.45497 * 99.22337 * 316.80941 * 16 14 13 18 18 H 1.08993 * 109.47116 * 88.10719 * 1 2 3 19 19 H 1.08999 * 109.46736 * 208.11097 * 1 2 3 20 20 H 1.09004 * 109.47013 * 328.10827 * 1 2 3 21 21 H 0.97001 * 120.00062 * 180.02562 * 6 5 3 22 22 H 1.09006 * 109.47245 * 30.00404 * 11 2 1 23 23 H 1.09003 * 109.47235 * 149.99951 * 11 2 1 24 24 H 1.09000 * 114.55593 * 274.22743 * 13 12 11 25 25 H 1.08993 * 114.55540 * 48.00383 * 13 12 11 26 26 H 1.08995 * 121.31478 * 196.18115 * 14 13 12 27 27 H 1.08999 * 114.62981 * 311.30150 * 15 12 11 28 28 H 1.09000 * 114.63465 * 85.33382 * 15 12 11 29 29 H 1.09000 * 111.44791 * 199.30860 * 16 14 13 30 30 H 1.08995 * 111.49292 * 74.33079 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1514 1.2313 0.4012 5 6 1.5563 2.3299 -0.5158 6 7 1.9800 3.5179 -0.1396 7 14 0.1614 2.1835 -1.7497 8 1 -1.1232 2.0075 -1.0260 9 1 0.0996 3.4161 -2.5755 10 1 0.3991 1.0103 -2.6285 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4432 13 6 3.3663 -2.9285 1.7207 14 6 3.4015 -2.2835 3.1324 15 6 3.5350 -0.9647 2.2764 16 6 1.8904 -2.3635 3.5430 17 8 1.2851 -1.9453 2.2878 18 1 -0.3633 0.0339 -1.0270 19 1 -0.3633 -0.9064 0.4842 20 1 -0.3633 0.8726 0.5430 21 1 1.5651 4.3173 -0.4998 22 1 1.6084 -2.0286 -0.5130 23 1 3.1499 -1.1385 -0.5133 24 1 2.8587 -3.8924 1.6859 25 1 4.3143 -2.9156 1.1830 26 1 4.1588 -2.5638 3.8645 27 1 4.4924 -0.8409 1.7703 28 1 3.1834 -0.0602 2.7729 29 1 1.6589 -1.6667 4.3487 30 1 1.6012 -3.3811 3.8054 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716116526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:45 Heat of formation + Delta-G solvation = 22.636375 kcal Electronic energy + Delta-G solvation = -13153.666809 eV Core-core repulsion = 10951.465905 eV Total energy + Delta-G solvation = -2202.200903 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.15624 -37.51010 -34.39771 -33.69328 -30.44452 -27.97884 -27.13943 -26.13255 -23.52785 -21.39985 -20.86363 -18.80787 -17.34301 -17.07141 -16.40975 -16.05149 -15.66475 -15.05318 -14.55997 -14.23970 -13.94048 -13.35001 -13.25755 -13.04208 -12.74200 -12.38159 -12.30814 -12.14316 -12.07874 -11.55423 -11.45033 -11.11763 -10.67190 -10.21133 -8.93610 -8.15316 -5.45287 1.34934 1.41803 1.51938 2.45655 2.82509 3.02895 3.28656 3.34685 3.49889 3.82831 3.88674 4.23618 4.57297 4.61400 4.63445 4.64352 4.71822 4.80603 4.90066 4.91819 4.92468 5.02435 5.14378 5.17729 5.20756 5.79228 5.87994 6.15773 6.92568 7.65411 8.02670 9.04604 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.056874 B = 0.011485 C = 0.010785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.198870 B = 2437.305994 C = 2595.471496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.616 5.616 3 C -0.244 4.244 4 H 0.059 0.941 5 C -0.034 4.034 6 N -0.955 5.955 7 Si 0.949 3.051 8 H -0.276 1.276 9 H -0.312 1.312 10 H -0.271 1.271 11 C 0.179 3.821 12 C 0.044 3.956 13 C -0.148 4.148 14 C -0.144 4.144 15 C -0.152 4.152 16 C 0.042 3.958 17 O -0.386 6.386 18 H 0.010 0.990 19 H 0.063 0.937 20 H 0.030 0.970 21 H 0.260 0.740 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.140 0.860 27 H 0.106 0.894 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.740 -14.488 4.296 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.339 5.339 3 C -0.374 4.374 4 H 0.077 0.923 5 C -0.229 4.229 6 N -0.602 5.602 7 Si 0.779 3.221 8 H -0.203 1.203 9 H -0.241 1.241 10 H -0.197 1.197 11 C 0.053 3.947 12 C 0.003 3.997 13 C -0.186 4.186 14 C -0.162 4.162 15 C -0.190 4.190 16 C -0.034 4.034 17 O -0.306 6.306 18 H 0.027 0.973 19 H 0.082 0.918 20 H 0.048 0.952 21 H 0.069 0.931 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.130 0.870 26 H 0.158 0.842 27 H 0.124 0.876 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.457 -14.321 4.198 14.995 hybrid contribution -0.529 0.725 -0.350 0.964 sum 0.928 -13.595 3.848 14.160 Atomic orbital electron populations 1.21285 0.83924 1.00580 0.97334 1.44134 1.01361 1.02328 1.86101 1.18850 1.00122 0.85879 1.32500 0.92305 1.25796 1.01280 0.94775 1.01050 1.69993 1.46581 0.97880 1.45703 0.85950 0.80342 0.75280 0.80526 1.20274 1.24080 1.19661 1.20575 0.97240 0.86294 0.90569 1.25046 0.84490 0.96725 0.93447 1.24320 1.00829 0.97121 0.96286 1.25249 0.97367 0.96812 0.96801 1.24602 0.99685 0.95940 0.98775 1.24077 0.91356 1.00676 0.87304 1.89659 1.28365 1.88083 1.24454 0.97269 0.91844 0.95154 0.93082 0.91527 0.90184 0.90141 0.86986 0.84194 0.87599 0.94526 0.91362 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.24 8.36 127.77 1.07 6.31 16 2 N -0.62 -30.08 2.70 -726.95 -1.96 -32.04 16 3 C -0.24 -13.99 10.02 84.03 0.84 -13.15 16 4 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 5 C -0.03 -2.05 5.20 84.86 0.44 -1.61 16 6 N -0.96 -61.09 13.97 21.65 0.30 -60.79 16 7 Si 0.95 48.32 24.04 68.60 1.65 49.97 16 8 H -0.28 -13.46 6.51 99.48 0.65 -12.81 16 9 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 10 H -0.27 -13.28 6.94 99.48 0.69 -12.59 16 11 C 0.18 6.96 5.95 86.38 0.51 7.47 16 12 C 0.04 1.55 2.15 -14.76 -0.03 1.52 16 13 C -0.15 -3.65 7.40 29.38 0.22 -3.43 16 14 C -0.14 -3.61 6.52 -12.48 -0.08 -3.69 16 15 C -0.15 -5.18 7.82 30.58 0.24 -4.94 16 16 C 0.04 1.16 7.91 73.31 0.58 1.74 16 17 O -0.39 -14.36 11.59 -148.98 -1.73 -16.09 16 18 H 0.01 0.43 5.16 -2.39 -0.01 0.42 16 19 H 0.06 2.62 7.78 -2.39 -0.02 2.60 16 20 H 0.03 1.51 6.60 -2.38 -0.02 1.49 16 21 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 22 H 0.07 2.32 8.07 -2.38 -0.02 2.30 16 23 H 0.08 2.97 8.04 -2.39 -0.02 2.95 16 24 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 25 H 0.11 2.36 7.88 -2.39 -0.02 2.34 16 26 H 0.14 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.11 3.32 7.89 -2.39 -0.02 3.31 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -68.52 242.65 3.08 -65.43 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.03 Total: 3.30 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 3.79 Total: -9.78 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -1.66 Total: -92.83 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.73 Total: -16.09 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.65 Total: 49.97 kcal Total: -68.52 3.08 -65.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716116526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.069 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds