Wall clock time and date at job start Mon Mar 30 2020 02:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46611 * 2 1 4 4 C 1.50703 * 109.47571 * 240.00357 * 2 1 3 5 5 H 1.08003 * 119.99945 * 239.99900 * 4 2 1 6 6 C 1.37871 * 119.99928 * 59.99208 * 4 2 1 7 7 N 1.31517 * 120.00647 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47095 * 90.00320 * 8 6 4 10 10 H 1.48500 * 109.47549 * 210.00283 * 8 6 4 11 11 H 1.48500 * 109.47304 * 330.00147 * 8 6 4 12 12 N 1.46899 * 109.47344 * 119.99705 * 2 1 3 13 13 C 1.46895 * 111.00203 * 275.00493 * 12 2 1 14 14 C 1.53001 * 119.81164 * 111.02013 * 13 12 2 15 15 C 1.54506 * 122.36832 * 183.40076 * 13 12 2 16 16 H 1.09003 * 122.36429 * 0.02562 * 15 13 12 17 17 C 1.54483 * 104.06360 * 136.78330 * 15 13 12 18 18 O 1.44426 * 104.80284 * 23.97771 * 17 15 13 19 19 C 1.44422 * 105.27439 * 319.49047 * 18 17 15 20 20 H 1.08999 * 109.47223 * 60.00664 * 1 2 3 21 21 H 1.09003 * 109.46611 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47337 * 299.99587 * 1 2 3 23 23 H 0.96997 * 120.00520 * 179.97438 * 7 6 4 24 24 H 1.00904 * 110.99720 * 151.04817 * 12 2 1 25 25 H 1.08992 * 117.43652 * 221.00909 * 14 13 12 26 26 H 1.09001 * 117.42748 * 5.65843 * 14 13 12 27 27 H 1.09005 * 110.37187 * 265.15056 * 17 15 13 28 28 H 1.08996 * 110.37438 * 142.81382 * 17 15 13 29 29 H 1.09008 * 110.37162 * 159.34384 * 19 18 17 30 30 H 1.08999 * 110.37352 * 281.56373 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6035 8 14 2.3215 -1.1202 -4.0079 9 1 1.3430 -2.1616 -4.4119 10 1 2.4867 -0.1413 -5.1123 11 1 3.6295 -1.7581 -3.7122 12 7 2.0197 -0.6924 1.1994 13 6 2.0824 0.2226 2.3469 14 6 1.1133 0.0428 3.5171 15 6 2.6343 -0.2127 3.7228 16 1 3.0049 -1.2204 3.9105 17 6 3.5176 0.9748 4.1657 18 8 2.9939 2.1126 3.4467 19 6 2.6976 1.6216 2.1212 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 0.7094 1.1617 -3.4845 24 1 2.9174 -1.1204 1.0287 25 1 0.6803 0.9428 3.9534 26 1 0.4609 -0.8303 3.4991 27 1 4.5573 0.7977 3.8903 28 1 3.4305 1.1323 5.2407 29 1 1.9805 2.2761 1.6256 30 1 3.6112 1.5456 1.5317 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000718095848.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:32 Heat of formation + Delta-G solvation = -11.760999 kcal Electronic energy + Delta-G solvation = -12853.576852 eV Core-core repulsion = 10649.884367 eV Total energy + Delta-G solvation = -2203.692485 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.91901 -35.56672 -33.67210 -31.63910 -28.38900 -27.17810 -25.33185 -25.11976 -20.79689 -20.22991 -18.72394 -16.77328 -16.03620 -15.44931 -14.95389 -14.73728 -13.72560 -13.52555 -12.68712 -12.55006 -12.30233 -11.87968 -11.45430 -11.16721 -10.96208 -10.73710 -10.59226 -10.22189 -10.14987 -9.88715 -9.67823 -8.97029 -8.84857 -8.51825 -7.40104 -6.06762 -4.13898 3.27291 3.33876 3.36392 3.85150 4.18007 4.37114 4.82504 4.94289 5.12917 5.24875 5.31401 5.60719 5.70353 5.82034 6.00823 6.04594 6.20715 6.27740 6.45587 6.85003 6.99135 7.14006 7.22177 7.47548 7.73410 7.83871 8.21116 8.30337 8.58433 8.95502 9.52210 10.99353 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.059215 B = 0.009140 C = 0.009008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.742329 B = 3062.790560 C = 3107.535680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.008 0.992 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.643 5.643 13 C 0.019 3.981 14 C -0.113 4.113 15 C -0.219 4.219 16 H 0.120 0.880 17 C 0.073 3.927 18 O -0.379 6.379 19 C 0.056 3.944 20 H 0.080 0.920 21 H 0.030 0.970 22 H 0.007 0.993 23 H 0.262 0.738 24 H 0.334 0.666 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -0.472 9.298 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.105 3.895 3 H 0.026 0.974 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.274 5.274 13 C -0.075 4.075 14 C -0.151 4.151 15 C -0.238 4.238 16 H 0.138 0.862 17 C -0.004 4.004 18 O -0.297 6.297 19 C -0.022 4.022 20 H 0.099 0.901 21 H 0.049 0.951 22 H 0.026 0.974 23 H 0.072 0.928 24 H 0.153 0.847 25 H 0.109 0.891 26 H 0.122 0.878 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.264 -0.379 9.364 9.641 hybrid contribution 1.105 -0.229 -1.285 1.710 sum 3.369 -0.609 8.079 8.775 Atomic orbital electron populations 1.21688 0.97675 0.99330 0.99516 1.19167 0.92834 0.92666 0.84804 0.97393 1.21255 1.31735 1.12660 0.90468 0.92236 1.24905 0.94987 0.94964 0.99035 1.69893 1.36453 1.22738 1.23572 0.86512 0.79201 0.79340 0.82423 1.20587 1.21226 1.19949 1.60562 1.31375 1.30340 1.05125 1.23186 1.03099 0.92706 0.88464 1.23273 0.90240 1.02720 0.98864 1.24608 0.96345 0.99747 1.03110 0.86172 1.22844 0.95977 0.84496 0.97056 1.89105 1.84068 1.32031 1.24479 1.23350 0.99445 0.95091 0.84364 0.90097 0.95089 0.97417 0.92833 0.84724 0.89106 0.87763 0.92015 0.89366 0.88494 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.30 2.52 -68.86 -0.17 5.13 16 3 H 0.01 0.22 6.06 -51.93 -0.31 -0.09 16 4 C -0.52 -14.17 8.59 -34.44 -0.30 -14.46 16 5 H 0.06 1.59 7.62 -52.48 -0.40 1.19 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.64 -13.72 6.63 -92.68 -0.61 -14.34 16 13 C 0.02 0.35 2.91 -130.04 -0.38 -0.03 16 14 C -0.11 -1.85 10.01 -25.35 -0.25 -2.11 16 15 C -0.22 -3.32 7.36 -87.67 -0.64 -3.96 16 16 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 17 C 0.07 1.03 7.54 37.94 0.29 1.32 16 18 O -0.38 -6.57 11.34 -35.23 -0.40 -6.97 16 19 C 0.06 1.04 5.94 37.93 0.23 1.27 16 20 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.01 0.16 8.07 -51.93 -0.42 -0.26 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.33 6.95 8.31 -39.29 -0.33 6.63 16 25 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 26 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.10 1.91 7.61 -51.92 -0.40 1.51 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 248.49 15.07 3.74 3.74 Total: -1.00 -28.24 248.49 -6.91 -35.15 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.26 Total: 4.82 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.99 Total: -13.96 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.01 Total: -38.85 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.40 Total: -6.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.24 -6.91 -35.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718095848.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.388 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds